Repbase Reports

2005, Volume 5, Issue 5
May 31, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 100

COPI1_I

An internal portion of Copia element COPI1: a consensus.

Submitted:
31-May-2005
Accepted:
31-May-2005
Key Words:
Copia; LTR Retrotransposon; Interspersed Repeat
Source:
Oryza sativa
Organism:
Oryza sativa
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; Ehrhartoideae; Oryzeae; Oryza
[4] Authors:
Jurka,J.
Title:
A consensus sequence of Copia-type element COPI1.
Journal:
Repbase Reports 5(5), 100-100 (2005)
Abstract:
The closest element in RU is COPIA3-I_OS. The youngest individual copies of COPI1 are >97% indentical to their consensus.
Derived:
[4] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Voytas,D.F., Cummings,M.P., Koniczny,A., Ausubel,F.M. and Rodermel,S.R.
    copia-like retrotransposons are ubiquitous among plants.
    Proc Natl Acad Sci U S A 89(15), 7124-7128 (1992)
  2. Wang,S., Zhang,Q., Maughan,P.J. and Saghai Maroof,M.A.
    Copia-like retrotransposons in rice: sequence heterogeneity, species distribution and chromosomal locations.
    Plant Mol Biol 33(6), 1051-1058 (1997)
  3. The Rice Chromosome 10 Sequencing Consortium,.
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science 300(5625), 1566-1569 (2003)

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