Repbase Reports

2005, Volume 5, Issue 4
April 30, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 71

CR1-13_SP

CR1-13_SP is a non-LTR retrotransposon - a consensus sequence.

Submitted:
30-Apr-2005
Accepted:
30-Apr-2005
Key Words:
CR1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease; reverse transcriptase; CR1-13_SP
Source:
Strongylocentrotus purpuratus
Organism:
Strongylocentrotus purpuratus
Taxonomy:
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
CR1-13_SP, a family of non-LTR retrotransposons from the sea urchin genome.
Journal:
Repbase Reports 5(4), 71-71 (2005)
Abstract:
CR1-13_SP is a non-LTR retrotransposon that belongs to the CR1 clade. Copies of CR1-13_SP are ~4% divergent from the consensus sequence. The consensus sequence is incomplete due to 5' truncations of CR1-13_SP elements upon their retrotranspositions. Active CR1-13_SP encoded a protein (pos. 800-3700) composed of the endonuclease and reverse transcriptase domains. Due to the small number of copies, the coding region is not well reconstructed (several stop codons). The 3' terminus of CR1-13_SP is composed of the (TTTGAA) microsatellite.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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