Repbase Reports

2005, Volume 5, Issue 3
March 31, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 47

COPIA2-I_OS

O. sativa Copia LTR retrotransposon - internal consensus.

Submitted:
31-Mar-2005
Accepted:
31-Mar-2005
Key Words:
Copia; LTR Retrotransposon; Interspersed Repeat; reverse transcriptase; COPIA2-I_OS
Source:
Oryza sativa (japonica cultivar-group)
Organism:
Oryza sativa (japonica cultivar-group)
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; Ehrhartoideae; Oryzeae; Oryza; Oryza sativa
[1] Authors:
Gentles,A. and Jurka,J.
Title:
Rice Gypsy LTR retrotransposon.
Journal:
Repbase Reports 5:(3) p.47 (2005)
Abstract:
962 bp LTR is COPIA2-LTR_OS. This copia-type retrotransposon appears to have been active recently in the rice genome, as there are numerous intact copies which are 99% or more similar to the consensus. The internal sequence contains a long uninterrupted ORF that has an integrase domain. The element is flanked in the genome by 5 bp TSDs.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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