Repbase Reports

2005, Volume 5, Issue 2
February 28, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 39

GYPSY1-I_OS

Rice gypsy-like endogeneous retrovirus, internal consensus.

Submitted:
00-Feb-2005
Accepted:
28-Feb-2005
Key Words:
endogeneous retrovirus; gypsy superfamily; LTR; reverse transcriptase; integrase; RnhA; ribonuclease HI; GYPSY1-I_OS
Source:
Oryza sativa
Organism:
Oryza sativa
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; Ehrhartoideae; Oryzeae; Oryza
[1] Authors:
Gentles,A. and Jurka,J.
Title:
GYPSY1_OS: Rice endogeneous retrovirus.
Journal:
Repbase Reports 5:(2) p.39 (2005)
Abstract:
Internal portion of a gypsy-type endogeneous retrovirus from rice. Corresponding 653 bp LTR is deposited as GYPSY1-LTR_OS. There are 24 full-length copies in the rice genome with similarities between 92% and 97.5% to the consensus (average 95%). The sequence is most similar to the ATLANTYS superfamily (65% similar at the protein level). 5 bp TSDs.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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