Repbase Reports |
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| 2005, Volume 5, Issue 2 |
| February 28, 2005 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 39 |
GYPSY1-I_OS |
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Rice gypsy-like endogeneous retrovirus, internal consensus. |
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Submitted: 00-Feb-2005 |
Accepted: 28-Feb-2005 |
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Key Words: endogeneous retrovirus; gypsy superfamily; LTR; reverse transcriptase; integrase; RnhA; ribonuclease HI; GYPSY1-I_OS |
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Source: Oryza sativa |
Organism: Oryza sativa |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; Ehrhartoideae; Oryzeae; Oryza |
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| [1] |
Authors: Gentles,A. and Jurka,J. |
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Title: GYPSY1_OS: Rice endogeneous retrovirus. |
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Journal: Repbase Reports 5:(2) p.39 (2005) |
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Abstract: Internal portion of a gypsy-type endogeneous retrovirus from rice. Corresponding 653 bp LTR is deposited as GYPSY1-LTR_OS. There are 24 full-length copies in the rice genome with similarities between 92% and 97.5% to the consensus (average 95%). The sequence is most similar to the ATLANTYS superfamily (65% similar at the protein level). 5 bp TSDs.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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