Repbase Reports

2005, Volume 5, Issue 2
February 28, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 37

ENSPM2_OS

Rice En/Spm type autonomous DNA transposon, consensus.

Submitted:
00-Feb-2005
Accepted:
28-Feb-2005
Key Words:
autonomous DNA transposon; TIR; transposase; En/Spm superfamily; ENSPM2_OS
Source:
Oryza sativa
Organism:
Oryza sativa
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; Ehrhartoideae; Oryzeae; Oryza
[1] Authors:
Gentles,A. and Jurka,J.
Title:
Rice DNA transposon ENSPM2_OS.
Journal:
Repbase Reports 5:(2) p.37 (2005)
Abstract:
There are 8 full-length copies of this DNA transposon in the rice genome with >93% similarity to the consensus. Generates 3 bp target site duplications; and has 29 bp imperfect TIRs. The sequence has a 1081 codon ORF including a Tnp2 type transposase domain similar to that found in other En/Spm transposons. This putative protein is 86% similar to the related ORF of ENSPM3_OS; but the DNA sequences are only 70% similar.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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