Repbase Reports

2005, Volume 5, Issue 11
November 30, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 394

Helitron-N1_SP

Nonautonomous Helitron transposon - a consensus sequence.

Submitted:
30-Nov-2005
Accepted:
30-Nov-2005
Key Words:
Helitron; DNA transposon; Interspersed Repeat; Non-autonomous; Helitron-N1_SP
Source:
Strongylocentrotus purpuratus
Organism:
Strongylocentrotus purpuratus
Taxonomy:
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Helitron-N1_SP, a family of nonautonomous Helitrons in the sea urchin genome.
Journal:
Repbase Reports 5(11), 394-394 (2005)
Abstract:
The genome contains several thousand copies of Helitron-N1_SP. Target site: TTT-TT, where "-" is an insertion position; no target site duplications. Terminal palindromes: 5'-TTATGCCTCCGTTACGAAGTAGCCGGAGGCATTATGTTTT... |-------> <-------| ...TGCTCTATGACGGAGGCATCATTTTCGACTGCGCGCAGTCGAATTCCATCTAG-3' <--------||--------> Helitrons (Helitron-N1_SP, Helitron-N2_SP, Helitron-N3_SP) constitute ~1% of the sea urchin genome.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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