Repbase Reports

2005, Volume 5, Issue 11
November 30, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 381

ERV4_MD_I

ERV4_MD, a class 2 endogenous retrovirus from Monodelphis domestica - consensus of internal sequence.

Submitted:
17-Nov-2005
Accepted:
30-Nov-2005
Key Words:
ERV2; Endogenous Retrovirus; Interspersed Repeat; ERV4_MD_I; RNaseH; aspartyl protease; gag-pol; integrase; reverse transcriptase
Source:
Monodelphis domestica
Organism:
Monodelphis domestica
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
[2] Authors:
Gentles,A. and Jurka,J.
Title:
ERV4_MD, a class 2 endogenous retrovirus from the opossum M. domestica.
Journal:
Repbase Reports 5(11), 381-381 (2005)
Abstract:
Copies of this consensus average 96-97% similarity to it, indicating that the element was active relative recently. There are four long overlapping ORFs putatively encoding typical endogenous retroviral proteins including reverse transcriptase and integrase. The corresponding LTR is deposited as ERV4_MD_LTR. This consensus was reconstructed from the June 2005 release of the 6.8X WGS sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. The Broad Institute of MIT and Harvard, Cambridge, MA, USA. Monodelphis domestica sequencing consortium
    Monodelphis domestica WGS sequence.
    Initial data release, version 2

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