Repbase Reports

2005, Volume 5, Issue 11
November 30, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 379

ERV3_MD_I

ERV3_MD, a class 1 endogenous retrovirus from Monodelphis domestica - consensus of internal sequence.

Submitted:
17-Nov-2005
Accepted:
30-Nov-2005
Key Words:
ERV1; Endogenous Retrovirus; Interspersed Repeat; ERV3_MD_I
Source:
Monodelphis domestica
Organism:
Monodelphis domestica
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
[2] Authors:
Gentles,A. and Jurka,J.
Title:
ERV3_MD, a class 1 endogenous retrovirus from the opossum M. domestica.
Journal:
Repbase Reports 5(11), 379-379 (2005)
Abstract:
Average similarity to consensus of full-length copies is ~96%. There are two ORFs, the first of unknown function; the second putatively encodes typical ERV proteins including integrase, reverse transcriptase. Copies are flanked by 4 bp TSDs. The corresponding 618 bp LTR is ERV3_MD_LTR. This consensus was reconstructed from the June 2005 release of the 6.8X WGS sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. The Broad Institute of MIT and Harvard, Cambridge, MA, USA. Monodelphis domestica sequencing consortium
    Monodelphis domestica WGS sequence.
    Initial data release, version 2

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