Repbase Reports

2005, Volume 5, Issue 10
October 31, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 336

SZ-56A_LTR

Gypsy-type LTR-retrotransposon from O. sativa (LTR portion).

Submitted:
11-Oct-2005
Accepted:
31-Oct-2005
Key Words:
Gypsy; LTR Retrotransposon; Interspersed Repeat
Source:
Oryza sativa
Organism:
Oryza sativa
Taxonomy:
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; Ehrhartoideae; Oryzeae; Oryza
[2] Authors:
Jurka,J.
Title:
SZ-56A: Gypsy-type, young LTR retrotransposon family member (a complete sequence).
Journal:
Repbase Reports 5(10), 336-336 (2005)
Abstract:
LTRs are identical. The protein coding portion was identified in ref. 1 as putative gag-pol polyprotein. This entry reports full coordinates including LTRs.
Derived:
Positions 95346 94923 Accession No AC068924 EMBL/GenBank/DDBJ
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Buell,C.R., Yuan,Q., Moffat,K.S., Hill,J.N., Jenkins,C.N., Burr,P.C., Hsiao,J., Zismann,V., Pai,G., Bowman,C.L., Fujii,C.Y., VanAken,S.E., Craven,B., Utterback,T.R., Khalak,H., Feldblyum,T.V., Quackenbush,J., White,O., Salzberg,S.L. and Fraser,C.M.
    Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence.
    Unpublished (2002)

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