Repbase Reports

2005, Volume 5, Issue 10
October 31, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 334

SINE-1_MD

SINE-1_MD, a tRNA-derived SINE element from Monodelphis domestica.

Submitted:
19-Oct-2005
Accepted:
31-Oct-2005
Key Words:
SINE; Interspersed Repeat
Source:
Monodelphis domestica
Organism:
Monodelphis domestica
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
[2] Authors:
Gentles,A. and Jurka,J.
Title:
SINE-1_MD, a potentially RTE-mobilized SINE from the opossum M. domestica.
Journal:
Repbase Reports 5(10), 334-334 (2005)
Abstract:
This SINE shares similarity over the first ~130 bp with MAR1_MD, but is clearly a distinct family. It lacks the poly-A tails and 16-17 bp TSDs of MAR1_MD. Based on shared age distributions, similar distribution of target site duplication lengths, and sequence similarity, SINE-1_MD may have been mobilized by an RTE-like non-LTR retrotransposon. The most likely candidate for the autonomous element is RTE-3_MD. This consensus was reconstructed from the June 2005 release of the 6.8X WGS sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Monodelphis domestica sequencing consortium,.
    The Broad Institute of MIT and Harvard, Cambridge, MA, USA
    Monodelphis domestica WGS sequence.
    Initial data release, version 2

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