Repbase Reports

2005, Volume 5, Issue 10
October 31, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 331

RTE-3_MD

RTE-3_MD, an RTE-like non-LTR retrotransposon from Monodelphis domestica - consensus sequence.

Submitted:
19-Oct-2005
Accepted:
31-Oct-2005
Key Words:
RTE; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease; reverse transcriptase; RTE-3_MD; SINE-1_MD
Source:
Monodelphis domestica
Organism:
Monodelphis domestica
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
[2] Authors:
Gentles,A. and Jurka,J.
Title:
RTE-3_MD, an RTE-like non-LTR retrotransposon from the opossum M. domestica.
Journal:
Repbase Reports 5(10), 331-331 (2005)
Abstract:
Copies around 83-84% similar to the consensus. RTE-3_MD shows no similarity to the other RTE elements in Monodelphis (RTE-1_MD and RTE-2_MD), but is similar to RTE-like elements in viper and cow (BOVB, BOVB_VA). Based on similar age distributions and target site lengths, and sequence similarity, the SINE SINE-1_MD may have been mobilized by RTE-3_MD. This consensus was reconstructed from the June 2005 release of the 6.8X WGS sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. The Broad Institute of MIT and Harvard, Cambridge, MA, USA.Monodelphis domestica sequencing consortium
    Monodelphis domestica WGS sequence.
    Initial data release, version 2

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