Repbase Reports

2005, Volume 5, Issue 10
October 31, 2005
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 310

L1-1_MD

L1-1_MD, a young LINE1 element from Monodelphis domestica - consensus sequence.

Submitted:
19-Oct-2005
Accepted:
31-Oct-2005
Key Words:
L1; Non-LTR Retrotransposon; Interspersed Repeat; endonuclease; reverse transcriptase; L1-1_MD
Source:
Monodelphis domestica
Organism:
Monodelphis domestica
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
[2] Authors:
Gentles,A. and Jurka,J.
Title:
L1-1_MD, a young L1 element from the opossum M. domestica.
Journal:
Repbase Reports 5(10), 310-310 (2005)
Abstract:
A relatively young L1 that has been active recently, and may continue to be so. Many full-length genomic copies are >99.5% similar to the consensus. Copies are flanked by 16-17 bp target site duplications. There are around 88000 copies of the element in the genome assembly. This consensus was reconstructed from the June 2005 release of the 6.8X WGS sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Monodelphis domestica sequencing consortium,.
    The Broad Institute of MIT and Harvard, Cambridge, MA, USA
    Monodelphis domestica WGS sequence.
    Initial data release, version 2

© 2001-2019 - Genetic Information Research Institute