Repbase Reports

2004, Volume 4, Issue 9
September 30, 2004
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 226

GYPSY1-LTR_CB

GYPSY1-LTR_CB is a long terminal repeat of the GYPSY1_CB LTR retrotransposon - a consensus.

Submitted:
00-Sep-2004
Accepted:
30-Sep-2004
Key Words:
LTR; Gypsy clade; mag lineage; 5bp TSDs; GYPSY1-I_CB; gag; protease; reverse transcriptase; RNase-H; integrase; GYPSY1-LTR_CB
Source:
consensus
Organism:
Caenorhabditis briggsae
Taxonomy:
Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[1] Authors:
Pavlicek,A. and Jurka,J.
Title:
GYPSY1_CB - a young family of autonomous LTR retrotransposons.
Journal:
Repbase Reports 4:(9) p.226 (2004)
Abstract:
GYPSY1-LTR_CB Copies are 99% identical to the consensus. Flanked by 5bp-long target duplications. GYPSY1_CB is related to GYPSY21-I_AG, GYPSY3-I_AG, and GYPSY18-I_AG. Last 24bp code for N-terminal part of the gap-pol polyprotein. The internal sequence is listed as GYPSY1-I_CB.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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