Repbase Reports

2004, Volume 4, Issue 6
June 30, 2004
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 181

GYPSY71-I_AG

GYPSY71-I_AG is an internal portion of retrotransposon GYPSY71_AG - a consensus sequence.

Submitted:
30-Jun-2004
Accepted:
30-Jun-2004
Key Words:
LTR retrotransposon; Gypsy clade; MDG3 lineage; 4-bp TSD gag; AP protease; reverse transcriptase; RNase-H; integrase GYPSY71_AG; GYPSY71-LTR_AG; GYPSY71-I_AG
Source:
Anopheles gambiae
Organism:
Anopheles gambiae str. PEST
Taxonomy:
Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles
[1] Authors:
Tubio,J.M.C., Costas,J.C. and Naveira,H.F.
Title:
GYPSY71_AG, a member of the MDG3 lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae.
Journal:
Repbase Reports 4:(6) p. 181 (2004)
Abstract:
GYPSY71_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its reverse transcriptase, RNase and integrase is phylogenetically grouped with representatives of the MDG3 lineage of other organisms. GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY33_AG, GYPSY34_AG, GYPSY35_AG, GYPSY36_AG, GYPSY37_AG, GYPSY38_AG and GYPSY72_AG are other members of this same lineage in Anopheles gambiae. The GYPSY71-I_AG consensus was reconstructed after multiple alignment of 4 copies. The consensus encodes the 1361-aa GYPSY71_AGP gag-pol like poliprotein (pos. 489-4571). The sequence of the LTRs flanking GYPSY71-I_AG is deposited as GYPSY71-LTR_AG. GYPSY71_AGP: MATVKQLCEDFTKIGLVRECERLGLETTGGKVEIANRIVKYRATVASGDNAGPSGSGHRAEPAN AIDDVENYAGNQPYESCDDDSEEKADLDLPEEGDSFVAEDDDETEEDPFQTAVRISTPKRPQRV YAFRDVEDSIETFGAEDGHDVRIWLAHLDSVSKSAGWNDEQKLIMLRKKMTGIARKFVSSLRNV QTYAILKKELIAEFAPFVRSSDVHRILANRKKETAETMREYVYEMQRIAAQIDLDEPSLCEYIV NGVTDDDFFKSLLYEAQTIRVLKEKLLNFEKVRMARKKKTTDKEENKRVLSSSSRVDKRAEQRC YNCGNKGHQARACAQTQGGPKCFSCREYGHKASECARNKSVVPAKINVTEESVGMVDVVLNKTS VKALFDSGSNQNLVTIGCYKRIEGSPLIDTSMWFQGFGGMRTKAIGMFTVDVTVDDNVFSGVRF FVVPNESMSYDAVLGRDSLNYFEVTMTTAGVKVRPYGSTDEMFSIVCDNEDNLDVSPRFSERVK AVISGYKPAVNVNSRVETKIILHDETPVRSSPRRFAPGEKAVLEKTIDEWLAAGIIRESESDFA SPVTLARKKDGSLRVCVDYRELNRKMVKDCFPMRNIEDQIDRLKSARVFTTLDLKNSFFHVPVE KSSQRYTGFVTHTGQYEFLRTPFGLVNSPASFSRFVADVFREFIKSERVLVYVDDLIIPSLDEE SNFQTLKELLNVASENGVQFNWKKSQFLKDEVEYLGYVIRGGCYRIAPSKLRSVQLFPEPKNVK QLQRFLGLTSYFRKFIAGYATISKPLTSLLQKGVEFVFGEEERSSFDELKRCLVTDPVLKIYDE SAETELHTDASKYGYGAALMQKSDDDKFHPVAFMSQQTSNAEKNYSAYHLEVLAVVRAVEKFRV YLLGIKFKIVTDCAAFGHTLKSKELSARIARWALMLEEYEYEVVHRPGSSMKHVDALSRAPVMI VKSDPMIEAIRKMQQSDERAKAIIELLKTQSFEDFVMSDGLLMKVVKGREVIVVPSGMQSDLIR RIHEKGHLGARKIEGIIEQEFYIPNASEKIKQTIECCVKCILAERKRGKVDGLLYPIAKGDVPL DTYHVDHLGPMDITEKRYKYLFVVVDAFSKYTWIYPTKTTNSFEVIQRLTTQSEVFGNPRRIIS DKGAAFTSNDFKRYCEDQDIERVEITTGVPRGNGQVERVNQVIIAMLRKMSVNDPAKWYKHVAN IQRWINSSPHQSIGVTPFEAMFGVPMRHEGDLRLGELMEEIRVAQHHDQREQTRAGARVSIEKA QEEQRRSYDLRARSATTYREGDLVVIKRTQFGPGRKYAAEYLGPYKVTSVRPHDRYDVEKINGE GPKVTSTASSHMKPYRF
Derived:
[1] (consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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