Repbase Reports

2004, Volume 4, Issue 6
June 30, 2004
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 171

GYPSY66-I_AG

GYPSY66-I_AG is an internal portion of retrotransposon GYPSY66_AG - a consensus sequence.

Submitted:
30-Jun-2004
Accepted:
30-Jun-2004
Key Words:
LTR retrotransposon; Gypsy clade; mag lineage; 5-bp TSD gag; AP protease; reverse transcriptase; RNase-H; integrase GYPSY66_AG; GYPSY66-LTR_AG; GYPSY66-I_AG
Source:
Anopheles gambiae
Organism:
Anopheles gambiae str. PEST
Taxonomy:
Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles
[1] Authors:
Tubio,J.M.C., Costas,J.C. and Naveira,H.F.
Title:
GYPSY66_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae.
Journal:
Repbase Reports 4:(6) p. 171 (2004)
Abstract:
GYPSY66_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its reverse transcriptase, RNase and integrase domains is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG, GYPSY60_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG, GYPSY65_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG, are other members of this same lineage in Anopheles gambiae. The GYPSY66-I_AG consensus was reconstructed after multiple alignment of 4 copies. The consensus encodes the 1409-aa GYPSY66_AGP gag-pol like poliprotein (pos. 95-4321). The sequence of the LTRs flanking GYPSY66-I is deposited as GYPSY66-LTR_AG. GYPSY66_AGP: MTTLDPSSMAALSHMIAEALKTAIGSAAGEARQDATPSTSRAPSFSHPAYRTTEGTVCDYFDRM EWALQLNGIPTEKYADYARVHMGAELNNALKFLIAPKLPQEILYKDLRKTLETHFDKQRNKFVE SIKFRQITQQQGESIAQFTLRLKQGAAHCDYGEFLDRMLIEQLLHGLMERGICDEIIAKNPVTF KDACEIASTLEATHNTAQEVNAGMPSVESTNKLGYEQPKTKKTPASRATSKPSKSTRRETSQGK PKQGTTNPGMCNGCGGNHLRNQCRFRDARCNTCNKKGHISKVCRSRKTNHDEDSINPVNTRPEA SIDYVQTLNALQTTSPSGKKMVEVTIDGHPLHMELDTGAPCGIISEAKLKTIKKQFRLLPSERQ FSSYSGHSITCLGRLPVNVAMGSANRKLNVYVVSGTSEPLFGREWIAQFSDQIDINSMFAPNVS VQSVTDTEPSAIQKSKLNDLLENFREVFSDTPGKLIGPPAKVHLKPGATPIFSKAREVPLSLRE RYAAEINKKIAAGFYERVDYSEWASPTHIVVKKNGNIRITGNYKPTVNPRMIVDEHPIPKVEDI FNKLKGAAFFCHLDLTDAYTHLPIDDDFKHVLTLNTVTHGLIRPTRAVYGAANIPAIWQRRMES VLQDLNNVVNFYDDIIVAAANFDNLLETLKGTLQKLKDNGLRLNRAKCVFAVPSLECLGHKIDR HGLHKSDKHIAAIRDAPRPNTPEELQLFLGKATYYSSFIPNLSTRARSLRDLLTAQTFEWNDVA DEAYQDIKEALISPQVLVQYDPTLPVILATDASKTGLGAVLSHRLSDGTERPIAYASCTMSKTK QKYPQIDKEALAIVWAVKKFFHYLYARKFTLVTDHKPLTQILHPEKSLPTLCISRMANYADYLA HFNFDVVFKPTNLNTNADYCSRIPNNSNVNQFKDEGRSSGDDFEQFAHVQIEQLPVRAEHIARE TRKDPHLGKILQHLEQGQNLGQYGYKAPESKYTIAANCLLFEHRVVIPSTLRQAILNDLHVAHF GIVRMKALARSYVYWPGIDADIEKTAKECHACARYGPTPPRFDSHHWEYPSAPWERIHIDFAGP VCNTMLLIVVDAFSKWVEVKPTNTITSAATIKILDELFATYGVPITVVSDNGTQFTAKEFKEFL QKSGVKYHKLTAPYHPATNGQAERYVQTVKNGLKAMGTTSANLTRNLNTFLQHFRKTPHAETKD SPAKLFLGRNIRTRLDLVRPQAVHASVSERQKAQFRPAFRTLPPGQSVYVLSGNTRMDKWIPAT IFARLGDLHYDVLYNGQHLKRHIDQIRRFEMKTNDEEESSSAAISPPVATTTTSTPLAVSSSTA TRRLRFYGHAAPSAPAEPEQVVTADDDLEDETFSTPPSSPQPPGNVSTTLRRSTRLRQPPKKFS P
Derived:
[1] (consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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