Repbase Reports

2004, Volume 4, Issue 6
June 30, 2004
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 159

GYPSY60-I_AG

GYPSY60-I_AG is an internal portion of retrotransposon GYPSY60_AG - a consensus sequence.

Submitted:
30-Jun-2004
Accepted:
30-Jun-2004
Key Words:
LTR retrotransposon; Gypsy clade; mag lineage; 5-bp TSD gag; AP protease; reverse transcriptase; RNase-H; integrase GYPSY60_AG; GYPSY60-LTR_AG; GYPSY60-I_AG
Source:
Anopheles gambiae
Organism:
Anopheles gambiae str. PEST
Taxonomy:
Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles
[1] Authors:
Tubio,J.M.C., Costas,J.C. and Naveira,H.F.
Title:
GYPSY60_AG, a member of the mag lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae.
Journal:
Repbase Reports 4:(6) p. 159 (2004)
Abstract:
GYPSY60_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its reverse transcriptase, RNase and integrase domains is phylogenetically grouped with representatives of the mag lineage of other organisms. GYPSY19_AG, GYPSY20_AG, GYPSY21_AG, GYPSY22_AG, GYPSY23_AG, GYPSY24_AG, GYPSY25_AG, GYPSY26_AG, GYPSY27_AG, GYPSY28_AG, GYPSY55_AG, GYPSY56_AG, GYPSY57_AG, GYPSY58_AG, GYPSY59_AG, GYPSY61_AG, GYPSY62_AG, GYPSY63_AG, GYPSY64_AG, GYPSY65_AG, GYPSY66_AG, GYPSY67_AG, GYPSY68_AG and GYPSY69_AG, are other members of this same lineage in Anopheles gambiae. The GYPSY60-I_AG consensus was reconstructed after multiple alignment of 3 copies. The consensus presents two ORFs. ORF1 encodes a 1109-aa GYPSY60_AG1p gag+protease+reversotranscriptase+RNase poliprotein (pos. 216-3542) and the ORF2 encodes a 423?aa GYPSY60_AG2p containing only the integrase (pos. 3346-4614). The sequence of the LTRs flanking GYPSY60-I_AG is deposited as GYPSY60-LTR_AG. GYPSY60_AG2p: KTGGHVTLPLAQIHLVITAGRKTIQRWEGCIFVGERVLIPEKLRKQCLSQLHRGHPGIQRMKAI ARSYVFWPSLNEDIIDLVSNCHSCALAAKSPAHADPLPWPKTTTPWERVHVDYAGPIDGDYFLV VVDAHTKWPEIIRTASITARITVSILRGLFARFGMPTTLVSDNGTQFTSGEFSEFCLSNGVHHI TSAPFHPQSNGQAERFVDTFKRSLTKIRVGGAPLQEALDLFLQTYRTTPNPQLEQNKTPAEVMF GRPIRTCFDLLRPPRKIQHDFREGNERSFERDDLVYAKAYSRNNWHWVPGRVIRKRGNVTYEVL TGHRSVIRHINQLKRRGPFSSPGPMTERFNPLPLDVLLDSWSIPVTPSVLPDVYPTQLAPPVAT PTEPPSLPPHRSIPQHQRSPRRSSRSRRAPRRFDPYLRY GYPSY60_AG1p: MNSPGDQPPSEEQRRASQNWYSVPGAASMPQQPQQPSLVAVPPNLQSAMPSAYQNPAPSQNFVE GSSHQAASSHQATSSHQAASSEQMMQLIILMQKQISQLTLMQNNSATAKPPENVLTSAPFAEQV LDSLSHHIKEFHYEEEAKMTFASWFARYEDLFERDASRLDDSAKVRLLIRKLGAAEYERYANFI LPKSCRDFSFSETIKKLSSLFGVKESLLHRRYKCLNLMKRRSEDYLAYSCRVNRACVDFEIGKL TEEQFKCLIYVCGLRDEEDVEIRTRLLGKIDDRNDTTLESLTADCQRILNLKKDSAMIEKAATE QVFAVQKKTDEPKFSERQNFQSRKHEYKRPQTLPGRNCWLCGKNHWARDCPFKSNVCRVCKKKG HRDGYCPKPKRYSDSPTYRNKFSSRVVSVNTTNVQQRRKYINIFINNVSTRLQFDTGSDITIIN RNVWQRLGKPELKRTVSARTASGSGLFLLGEFEANVTIGSVTHVATLRVAQADILLLGTDLIDL FALGSTPMDAFCRHISSEDYSKTVERRFQEVFNGMGLCTKASVKLQLKENVRPVFCPKRPVAYA VQELVDKELDRLEQMSIISPTDYSEWAAPIVVVRKANGSIRLCGDYSTGLNDALQQHEYPLPLP EDIFARLSQCKIFSKIDLSDAFLQVEIDPAYRSLLTINTHRGLFTYNRLPPGIKIAPAAFQQLI DTMLAGVKGVSCYMDDIIVGGATEQEHEANLMAVLKRIQEYGFSIRSEKCAFKVQQLRYLGYII DTHGLRPDPAKIDVIKRLPEPTDVSGVRSFLGAINYYARFVPNMRELRYPLDNLLKTNAQFRWT ADCKRAFERFKSLLSSNLLLTHYDPRHKIIVSADASSIGIGATISHMFPNGTIRVVQHASRALT KTEEGYSQIDREGLAIIFAVTKFHKMIFGRRFQLQTDHRPLLRIFGSKKGIPVYTANRLQRFAL TLLSYDFGIEYVRTESFGNADVLSRLINKHDKPDEDCVIASVALEMDVKSIATSALVTFPLSFR EVARETNRDPIARKLHYYIKNGWPRNIALGADSSRYHSRKEDYSTVGRMYFCRRESVNTRETTQ AMSVPASSRTSWYPAHEGDCA
Derived:
[1] (consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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