Repbase Reports

2004, Volume 4, Issue 4
April 30, 2004
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 120

SINEX-4_CR

SINEX-4_CR is a putative nonautonomous non-LTR retrotransposon - a consensus.

Submitted:
30-Apr-2004
Accepted:
30-Apr-2004
Key Words:
nonautonomous non-LTR retrotransposon; SINE; SINEX-4_CR
Source:
consensus
Organism:
Chlamydomonas reinhardtii
Taxonomy:
Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
SINEX-4_CR, a putative SINE-like non-LTR retrotransposon from the green algae genome.
Journal:
Repbase Reports 4:(4) p. 120 (2004)
Abstract:
About 30 copies of SINEX-4_CR are present in the C. reinhardtii genome. They are ~99% identical to the consensus sequence. Usually SINEX-4_CR are flanked by 11-15-bp target site duplications. Th 58-bp 3' terminus of SINEX-4_CR is 91% identical to that of SINEX-1_CR. The putative Pol III internal promoter (pos. 50-73) was derived from tRNA. This region is similar to the Pol III promoter of RATHE2 (pos. 55-78), a SINE element identified in the A. thaliana genome (GenBank, AY033702).
Derived:
Download Sequence - Format:
IG, EMBL, FASTA
References:

© 2001-2018 - Genetic Information Research Institute