Repbase Reports

2004, Volume 4, Issue 4
April 30, 2004
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 109

LINE2A_CB

Caenorhabditis briggsae family of LINE retrotransposons - a consensus.

Submitted:
30-Apr-2004
Accepted:
30-Apr-2004
Key Words:
LINE; CR-1; Cb000170; LINE2A_CB
Source:
consensus
Organism:
Caenorhabditis briggsae
Taxonomy:
Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
[2] Authors:
Pavlicek,A. and Jurka,J.
Title:
LINE2A_CB - a young autonomous family of LINE retrotransposons.
Journal:
Repbase Reports 4:(4) p.109 (2004)
Abstract:
The consensus sequence was reconstructed from the Ensemble genome annotation. Copies are >98% identical to the consensus. Distantly similar to LINE2A_CE and CR1-5_AG. LINE2A_CB contains a single open reading frames with endonuclease and RT domains. LINE2A_CB_ORF: 75-3774 (1233 aa) MVVTIIKHKPRNKRKALSALKDENGGKKSKLSEYSSKEAVDDIIESVDDMSNPLYDLLSNDFKSKEEFTV NDIAMMFKSLAETILKLQSQNTMLKNQNCILNANLSNLTEKVDGLEENLKLLSSQPKESPKPPTTLIKTF ASAVASTISAPESQITFMRAASLANSEDARKSNVIIKNIDLSEEAIEKAEIRLQNCQGLRYFDAIGFSHT SSGQRAAHCAPGIQVQGGSKNCPHQIQLNQSFNTGVLECVSPPRPLQTRTREISTILENGDPKEQRGRSN HLYGSQSGSRQSCLQRKSGAVAMGQKTLDPRKFLKIGYTNSCSIKNKVLQLDLWSSNSNIDILCLVETKI DSNYPDSLLSLDEKYAVIRKDRNRHGGGLAILIKKPINYTVVSLPTHLESVEILSVDIKIHGKTTRLIVS YNPNHNYCFKDLRESLNILLSTENPSIITGDFNCAHVDWNSYTASDSQCQSLLDFSLYNGLTQFVQNPTR LEQPNILDLVFTNSMDIIRDVIVGEKFSDHCRIEIDTFILLNSISPLKSTKNFKKGDFRSMNYILSNIDW DLRFSTMSIDEMFDDLRGIILELIESFVPTETHRIHNIIYSKETKQLLKKKLLIWKKAGNSDEYKHVSAL FKRSLVKSEEERIYKRLNSGSKNFFGFMKSKFKGNSDIPAIRYKSNENVIMSDEGKAEIFGDCFSEFFNI DKDILPATGNLISKFSSDVIFTPENIELLLYKLKGRNNTSPDSIPSIFLKRACTPLAIPLCIIFTESYRV GRIPKSWKEAIVMPLHKKGSRSDPLNYRPISLTSNICKIMEKLIRKHLVQYLSENNLLSEKQFGFLNQRS TISQLIAYQNKLVFNSLNGLDTHSVYIDFQRAFDTVPINKLIHKLESFGISPKLRNWLHSFVTDRKFQVK INDILSKERRVLSGVPQGSVLGPTLFLLYINCIGDKFQSDYLLFADDLKIYDTNDRLIDADLIELENWCS KWKMKAAPKKCEYIKFNATRKYANSNVMNPKLNQALIPPVENVRDLGIYFSSNLSFHYHYSLIIRKSHQR INMFFSILKNASWSVFIKCYTIYIRPLLEYGTIVTSPILKDHIIKLESVQKSFVFRIFKKFRMAYTSYFE ALEECQLSSLEYRRLYNDLVYTYKIIVSKEIIMEVPIFEIFNHAGSLRRHKYYLKSLIKNSTKISSQFLS NRVIRCWNSLAKVCPVKPSSAAFKNRLLSCDLKHFLVLNSTNY
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Stein,L.D., Bao,Z., Blasiar,D., Blumenthal,T., Brent,M.R., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A., Coulson,A., D'Eustachio,P., Fitch,D.H., Fulton,L.A., Fulton,R.E., Griffiths-Jones,S., Harris,T.W., Hillier,L.W., Kamath,R., Kuwabara,P.E., Mardis,E.R., Marra,M.A., Miner,T.L., Minx,P., Mullikin,J.C., Plumb,R.W., Rogers,J., Schein,J.E., Sohrmann,M., Spieth,J., Stajich,J.E., Wei,C., Willey,D., Wilson,R.K., Durbin,R. and Waterston,R.H.
    The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
    PLoS Biol. 1(2), 166-192 (2003)

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