Repbase Reports

2004, Volume 4, Issue 4
April 30, 2004
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 106

Copia3-I_CR

Internal portion of the Copia3_CR retrotransposon.

Submitted:
30-Apr-2004
Accepted:
30-Apr-2004
Key Words:
LTR retrotransposon; copia superfamily; 5-bp TSDs; protease; endonuclease; reverse transcriptase; Copia3-LTR_CR; Copia3-I_CR
Source:
consensus
Organism:
Chlamydomonas reinhardtii
Taxonomy:
Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Copia3_CR, a family of copia LTR retrotransposons present in the Chlamydomonas reinhardtii genome
Journal:
Repbase Reports 4:(4) p. 106 (2004)
Abstract:
Copia3-I_CR is an internal portion of the Copia3-CR LTR retrotransposon, whose LTR is deposited in Repbase as Copia3-LTR_CR. Copia3-I encodes a 1670 Copia3_CRp polyprotein (pos. 69-5078) composed of the C2HC zinc finger, protease, endonuclease, reverse transcriptase, RNase H. The PBS is complementary to an internal portion of tRNA Met. Copia3_CRp: MDDSSSGLVKFKQLQDDAANYFTWLIQLYDFLTTRKVPLGVYLYTSTPPGRTALELADENGQALSWLRTS CTPNVARQLWQAPDAVTALAYIQGLFRASAAQKLQQCDMERSCFQLEEGENMSQYFARASDLRDRIYALG GTWEEPAVRLRLLNGLPLPAYEVLVEICNSQPQQTVAELRGYLMQHEVTKRFRQANGGHVGNVNRSRGGN AGGGGGAGGSSSSGGIVCHYCEQPGHIKPNCAVRQADVSAGIQRASIRSPVQLQQQQQQQQQQKKHGGGG GGGGGSGSGDGAKKRGKGGGGGSGARGGARSAASRPAHVLVVSSVDDWAEDYPSSSLIVHTFGAEPASSG AISSYSMADDGVPSASVIGDHGGCSSTSTFSYSSAGNGLSSSSYSGSAAPPPGAGSSLLSNTYRAVTRDF GGSNSSSTGAGVSSCSSGVAGPAGLGGRVLVVCDVSRGSMLSPSAGGGGSDDASGSVGGSFASAAAFDVP VIDSGTFAHITPHRRLLHDFVVRPRVSHVLWGDGRSSPVGGSGTLRMLSGQQRVDVTGVLYVPDAHLSLL SVRRLASSGAKVAFEGESATVELAGRSILSGRVRDGQYPLSVTMLPVLLAAPAMAPPAIGGGTAAPVSGG GAAATGSDSSFLPSSAAAPSGSGGTTSSSLNSSGASSSSNGTAASSGGGGTVSSSSSSSVTALSAAHRLH RRFGHVGWHSLMQMVNGSLVTGLDVDLSALSQAAESVCSTCVEAKAASSPFPDSSSEPQQPLALAHSDVC GPMPVMGRGGSRYFITLLDDATGVSAVRMLTTREHAGEALQEMIVQLENCHPGGGKLRNLRSDNGGEYRS EELQQWLRERGTVQQFSAPYMPQQNGAAERLNRTLMDRTRAILFDAALSSSFWPEAVTYASHLRNLSPSS SCSSTPWEALTGVKPDISSLRTFGCRVYVTLPADQRSKLNPRADIGTYLGLQRNSAAYRVMVGGKVVVSR DVRFDEDVRGPASRLAGVPFGSNSSAAAPAAVNPPAVAESPAPSPAPAAPPSRPATRSQRPVLTPPLSAF ASAAGGGSHSNSSNSAASAAAAAAAQLFDEDSDDDETPPLAPPSDDEDSYGVSTATTAGVGEPSSYAEAS SGPHAADWRKAMEEEMESQRDNKTWELAAPPPGVRLLANRWVYKLKPQPGGAPRFKARLVVKGFAQREGI DYSEVFAPTSRYVSLRAILAIAAARGLSLHQMDVKTAFLNGDLDEELWMQQPQGFEVSGDGGGGDTGGGG GADGGGSGGSSHRSVPLACRLLKSVYGLKQAPRCWYRKLSEELGGLGFTPATADPALFVRHDEAGPVYVL VHVDDLLIAAGCSAQLAAVKAAIGKCFEVRDLGEASTYLGMEIKRDPSTGDILLQQRRYVNELLQRHGMT DAKPRSLPLPAGTRVLAASEQQPVLDDGGPYRSLIGGLNYVAVSTRPDIAYALSVLARHMAAPTKAHLAL ATGVLRYLKHTVDMGLRFSASASGGGGGAGSSSAGGGAAAGYDAGSFVGYCDADWAGDPNTRRSQTAFLF ALGKTVVSWCSQQQRTVAASSVESEYQAAAAATKEALWLRKLASDLGLRSGAVAIRCDSQGALSLARNPI ASSPLSKHIDIQHHLVRERVARGEVAVEYCPTEQMIADALTKALPEAKFFFCRAAMGVST
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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