Repbase Reports

2004, Volume 4, Issue 3
March 31, 2004
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 100

GYPSY54-I_AG

GYPSY54-I_AG is an internal portion of retrotransposon GYPSY54_AG - a consensus sequence.

Submitted:
31-Mar-2004
Accepted:
31-Mar-2004
Key Words:
LTR retrotransposon; Gypsy clade; Mdg1 lineage; 4-bp TSD gag; AP protease; Reverse Transcriptase; RNase-H; integrase GYPSY54_AG; GYPSY54-LTR_AG; GYPSY54-I_AG
Source:
consensus
Organism:
Anopheles gambiae str. PEST
Taxonomy:
Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles
[1] Authors:
Tubio,J.M.C., Costas,J.C. and Naveira,H.F.
Title:
GYPSY54_AG, a member of the Mdg1 lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae.
Journal:
Repbase Reports 4:(3) p. 100 (2004)
Abstract:
GYPSY54_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its Reverse Transcriptase, RNase and Integrase is phylogenetically grouped with representatives of the Mdg1 lineage of other organisms. GYPSY8_AG, GYPSY9_AG, GYPSY10_AG, GYPSY11_AG, GYPSY12_AG, GYPSY13_AG, GYPSY14_AG, GYPSY15_AG, GYPSY16_AG and GYPSY17_AG are other members of this same lineage in Anopheles gambiae. The GYPSY54-I_AG consensus was reconstructed after multiple alignment of 4-7 copies. The consensus encodes the 440-aa GYPSY54_AG1p gag-like poliprotein (pos. 305-1624) and the 1183?aa GYPSY54_AG2p pol-like poliprotein (pos. 1558-5106). The sequence of the LTRs flanking GYPSY54-I_AG is deposited as GYPSY54-LTR_AG. GYPSY54_AG1p: MNPRVLALRNRSVQVHSKSVNNINPSLPQLNSTANSESCLNTQYNYQKRLQILKGELLNQ SLEIDRALNASFSKMAYEFPTEKAMLCIPEYHGAAKELDGFLFQVEYFANQIPRGESEED LIRTVMFKLKGNAAGFFSRILDDTWANVKLNLIKLFGEKMSVEAIFQQVETLQQGVNEPF TQYKERVARLKQNIMNIDTKNSEDSYAQKNLKIHFLAGLRNPELQTLARTNKHLEFDDLL EYLEDEVVQIEHIRKIEARLNRSQTPVPNNEYDETYNASQNNSFNNRSMGHNTTYGGNQP HTLMNNSSASRCDHNNTNNLDTCDFGQPQHNSTTHNQNNTNFNYDGQPQHNSTTHNQNNT YFNSSLAQPNRYFASYKNNYTQHPRKHYYQNRNQYTQPPQHHYENTCPPSSQNYYAHKFS QGPSQYTYQKQAYQNMHTKN GYPSY54_AG2p: IFTRAFSIYLPKASISKHAYKKLIQGTLVDFNTKTSVPLKQNNMFSVGLQTETCKETKQT LHSTPIDECESLNIECTRDGRLMAKILSQNVNKKMVNFLIDSGACFNALSLDIAKELGLD FMNHNDKVTLSSFDGSLSNTEGSMFLKLHIGNFVYPIKFYILEKLSVPAIIGADFLKKYT MCIGSNFQIIYLKKPLNTEPLNTADENIKKNMDELEQIDGTLFENSDNTQKENFELLPHI EKQLADCDVVKTSKDRELVGSERYKELMDKINLNHLNNATKINTKKIIADFSDIFYLPGD KLTYTQAATHEIETSSNIPIFKRQYRFPTALNMIMEEQIEEMLKQHIIRPSKSPWNAPVM CIPKKSENDQKKYRIVVDFRALNIITKPFIYPIPRIDDIMDNIGNSKIFSTIDLKSGFFQ IPIAPKDAEKTAFSTSKGHYEFLRMPMGLKNSPATFQKLMNTVLYTIQPIKAFVYLDDIV VFGDTVEEHNNTLTKVLEALKCHNLKIEPAKCKLLHTEITYLGHTINEKGIKPTQLNVKA ILNMQTPKNLKEVRSFLGTINFYGKFIPNVSDIRKPLHELLKKNVKFIWNERCDEAFTKL KSLLISEPLLVRPDFGDVFVITTDASDYALGAVLTNEKTIERPIAYASRTLVGAEKRYHP IEKELLAIVWAVDHFKHYIYGQKFIIYSDHRPLVSIWRLKENSPVLSRLRLRLQGLECEI RYKKGKENIVADFLSRLPEVKENEHDEEVNNTVAVVTRGQTKKKVVLELNNDNGEERIEA SKSTTLQDDHWENLMKIDLEKETSEKEAKRKEQLEKVKQTVVTKFQNYNPFSDKIEIERS EINTVLHEFHDAPLGGHVGVRRMKKRIKELFFWKGMDRDIEGHVKGCKSCQLNKIGRFNK IPMQITTTSKQAFEKMFMDIVVLPESERGNKYGLVIQDDLSRYLIVTALENQEATTVAKA FVEEVICRYGAPVEIVTDQGTNFMSQIMKETCKILKIKKINTSAYHPQANLVERANRELK IYLRQFVGKNYQQWDSVLPYFAMEYNTSINSSTGFTPYELVFGRKARLPTSIYKEKNRKK LYSDFCEELITKLTEIHSIARNNLINSKEKRKEKYDRNAIDWQPMWGEMVLVRNNQTGVG QKLQGIWKGPYEVVGIPSEQTCEIRNGRKIEKVHNNRLKKFNE
Derived:
[1] (consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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