Repbase Reports

2004, Volume 4, Issue 3
March 31, 2004
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 92

GYPSY50-I_AG

GYPSY50-I_AG is an internal portion of retrotransposon GYPSY50_AG - a consensus sequence.

Submitted:
31-Mar-2004
Accepted:
31-Mar-2004
Key Words:
LTR retrotransposon; Gypsy clade; CsRn1 lineage; 4-bp TSD gag; AP protease; Reverse Transcriptase; RNase-H; integrase GYPSY50_AG; GYPSY50-LTR_AG; GYPSY50-I_AG
Source:
consensus
Organism:
Anopheles gambiae str. PEST
Taxonomy:
Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles
[1] Authors:
Tubio,J.M.C., Costas,J.C. and Naveira,H.F.
Title:
GYPSY50_AG, a member of the CsRn1 lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae.
Journal:
Repbase Reports 4:(3) p. 92 (2004)
Abstract:
GYPSY50_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its Reverse Transcriptase, RNase and Integrase is phylogenetically grouped with representatives of the CsRn1 lineage of other organisms. GYPSY48_AG, GYPSY49_AG, GYPSY51_AG, GYPSY52_AG and GYPSY53_AG are other members of this same lineage in Anopheles gambiae. The GYPSY50-I_AG consensus was reconstructed after multiple alignment of 3 copies. The consensus encodes the 251-aa GYPSY50_AG1p gag-like poliprotein (pos. 67-819) and the 1044?aa GYPSY50_AG2p pol-like poliprotein (pos. 738-3869). The sequence of the LTRs flanking GYPSY50-I_AG is deposited as GYPSY50-LTR_AG. GYPSY50_AG1p: MSTENVSNEETSPATAAVSVKLPEFWKNDPSLWFSQAEIQFLLAGVHKDETKFYHIVAKL EQSVLCHIADYVKQPPATGKYEAVKQRLISRFELTEQAKMDQLLGSYDFGDLRPTHLLTK MQELAAGLNVNDSLLKRLFLQKLPANIRAILSIHDGSLSKLAEMADKMIEMAPQTSVIHA SVQKETTENLAEEVAAMKVELRQMKARQPERGRLRSTSQNRSNENICWYHRKYGNRATRC RSPCQYHQSKN GYPSY50_AG2p: KHLLVSSEVWKSSYAMSKPLPVSSVKKLDFRPSEIGEVGGLRISRRLQIFDKSSGIRFLI DTGSDVSIIPASKIEKTREPSPFLLHAANGTKIRTYGSKFVSVDLGLRRKFSWNFLQADV TSAIIGADFLAHFGLLVDLGNRKLIDGGTKLHTVCGLSKSSVYGVTTIAKDHPFRDLLVE FREITAPPTMRTEVRHNVTHHIQTTGPPVASKPRRMPPDKLQAAKKEFETMMELGICRPS KSSWASPLHCVPKKNGQWRFVGDYRSLNRITVPDRYPVPHIHDLLNNFLGKNCFTTLDLV RAYHFVPVEESDVPKTAVITPFGLFEFTKMQFGLCNASQTFQRFMHHVFGDLDFVVVFVD DICIASSNEEEHLSHVRTVFERLKSNGLVLNLDKCKFVQKEVNFLGYHINASGIKPQANR VQAVVDYSRPITVKDLRRFLALLNGYKRFIRNAVSLQQPLQALIIGNRKNDTRKLQWTIA ADEAFVKCKESLANAALLSYPDSSKRMGLMIDASDTAAGATLQQNVAGAWQPLGFFSQKF SPSQKKYSVFGRELTAMKLAVQYFRHLVEGREFTIYTDHRPLTYALNSNSNHLPHEERYL QYISSFTKDIRHISGKDNSAADALSRVNTISAPSTVDFELLSKAQHDDPELQKLLADRTT SMNLQLRSSVSTNQLLYCDVSDNVHVRPYVPEKLRLEVLRNIHCLSHPGVRATRKMVARR FVWPSMNRDVARFVRSCIDCQRSKIHRHTSAALNEFELPKSRFRHVHIDLVGPLPTSNGK RYLLTMIDRFSRWPEAVPLPDILAETVAKAFCECWISRFGVPETITTDQGRQFESELFTE LTRLLGALRIRTTAYHPEANGLIERFHRTLKTSLTCVDSKRWCDKLPLVLLGLRTAIRED IDCSVAEMTYGQPLRIPGDFLEPSKTEICRSEFAKLLCRTMQQIGPIRNSHHDKRSVFVP KDLQSCKSVFVRIDSVKRPLTHPYEGPFQIIERHEKYMDLNMNGEKRRISIDRIKPAYIC EKDSNEDNERTKVTPSGHRVRFLA
Derived:
[1] (consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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