Repbase Reports |
|---|
| 2004, Volume 4, Issue 3 |
| March 31, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 58 |
GYPSY33-I_AG |
|||
|---|---|---|---|
GYPSY33-I_AG is an internal portion of retrotransposon GYPSY33_AG - a consensus sequence. |
|||
|
Submitted: 31-Mar-2004 |
Accepted: 31-Mar-2004 |
||
|
Key Words: LTR retrotransposon; Gypsy clade; MDG3 lineage; 4-bp TSD gag; AP protease; Reverse Transcriptase; RNase-H; integrase GYPSY33_AG; GYPSY33-LTR_AG; GYPSY33-I_AG |
|||
|
Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
|
| [1] |
Authors: Tubio,J.M.C., Costas,J.C. and Naveira,H.F. |
||
|
Title: GYPSY33_AG, a member of the MDG3 lineage of the Ty3/gypsy group of LTR retrotransposons in Anopheles gambiae. |
|||
|
Journal: Repbase Reports 4:(3) p. 58 (2004) |
|||
Abstract: GYPSY33_AG is a family of gypsy-like LTR retrotransposons that, according to the aminoacid sequence of its Reverse Transcriptase, RNase and Integrase is phylogenetically grouped with representatives of the MDG3 lineage of other organisms. GYPSY29_AG, GYPSY30_AG, GYPSY31_AG, GYPSY32_AG, GYPSY34_AG, GYPSY35_AG, GYPSY36_AG, GYPSY37_AG and GYPSY38_AG are other members of this same lineage in Anopheles gambiae. The GYPSY33-I_AG consensus was reconstructed after multiple alignment of 5-7 copies. The consensus encodes the 1466-aa GYPSY33_AGp gag-pol like poliprotein (pos. 82-4479). The sequence of the LTRs flanking GYPSY33-I_AG is deposited as GYPSY33-LTR_AG. GYPSY33_AGp: MLTKDQMLCALECANVPVSPNATIAQIRKMYETTFESVQNMNNPYDVPSVSGKPKEETALALQSETHVSE NNATTMTHAENDVTAILRNEHNTATHDSTIAGNPQSDTPNLNDEIEMLKKKLEILELKQRITALEAPTVP FPGPQPPIFNFEEIVDKFSGDNNDHIERWFKELERAFLPYNMDNTMKLHYTRRLLTGTAAKFAKSLDFTA YHELKDSLIETFSETKSLENVYKQLRSRQLGRNESITRYVLDMQALAWGTPVPEEDLVNIIIDGINDPIN TASIRFAARSLTDLKRLLKRYEQIRPQHIATPSSSGTIRQPSNVSKTSDNQQAPAVVRCYNCSQFGHYQN SCPMPRRPPGSCFKCHQVGHAARNCPIKIIIPSAAAHYKDQGNEDQGTTLDEFEQVSVAFQNQNDPSKVL TCVRSLLDTGSPVSFIDSSIVPKTLVKPPLTSRYQGLGNQMLVVCGEVSCKINLRKDEAVHTFIILPSDS IAWPMIIGRDLLKKFNIFLYKNKSKIELNKGPTNLNRETCMSSLAQSIPLPQDTLDLVPFKLERLCPAEY HDTQNEAFEEICAIDLSDDVSELHIGKHLTGHENSALLCSINQNYLNYPSEKIIPPDHSMKISLTHDTPL FTKPRRLSYGERNQVREIVNDLLEKQIIRPSNSPYASPLVLVRKKSGEIRMCIDYRPLNKITVRDNFPLP LIETCLEHLSNKRIFTLLDLKSGFHQVKMHDDSIKYTSFVTPDGQYEYVKMPFGLKNAPSEFQRFINNIL REFIEADKLVVYLDDIIIASVDFNSHLSTLSAVLTKIRQNGLELRLDKCRFGQQELDYLGYKANSCGIRP SDRHIAVIKNYPIPTNTKQVRRCLGLFSYFRRFVPSFSHIAKPLTNLLQNEKRFDFDSTCENAFKSLREK LILSPVLAIFDPKRETELHCDASSSGFGAVLLQKQDDGRFHPIAYFSKSTTTDESKLHSYELETLSIIYA LKRFHVYVHGIPVKIVTDCNSLVETLKNRNTSAKIARWSLFLENYEYSIQHRAGSSMNHVDALSRLESSC AVNEIDLDFQLQVTQARDSVIEEIKKNLELGPVAGFTLQDGLVYRVSPSKGLQLYVPREMSENIIRHVHE KIGHLAVDKTYDKIGTHYWFPYMKSKVEHFIRNCLKCIIYSAPTRINNKNLHSIPKEPVPFHTLHIDHLG PLPSIRSQKKYILVVIDAFTKFMKMYATRSTNAQEVCNILNQYMSYYSRPKRIITDRATCFTSNQFENFL EHNGIQHILNATSSPQANGQVERVNRVLRPMLSKLSDFHDHSDWSSQLRSAEYALNNTKHASTNFTPSIL LFGIEQRSCEVDELEEFLDEKNILNVNRPLIEIRHKASENIKRSQEINENYFNKNHKPATKFQKGDFVVI RNVDTTTNTNKKLIPKYKGPYVIHKVLPSDRYVIRDIDGCQVTQMPYDGVLEANKLKKWIEPCLRV
|
|||
|
Derived: [1] (consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||