Repbase Reports |
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| 2004, Volume 4, Issue 2 |
| February 29, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 35 |
Gypsy-1-I_CR |
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Gypsy-1-I_CR is an internal portion of Gypsy-1_CR LTR retrotransposon - a consensus. |
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Submitted: 29-Feb-2004 |
Accepted: 29-Feb-2004 |
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Key Words: LTR retrotransposon; Gypsy superfamily; gag; protease; reverse transcriptase; endonuclease; chromo domain; 5-bp TSDs; Gypsy-1-LTR_CR; Gypsy-1-I_CR |
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Source: consensus |
Organism: Chlamydomonas reinhardtii |
Taxonomy: Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; Volvocales; Chlamydomonadaceae |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Gypsy-1_CR, a family of gypsy LTR retrotransposons from the green algae genome. |
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Journal: Repbase Reports 4:(2) p. 35 (2004) |
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Abstract: Gypsy-1_CR can be still active retroelement. It is flanked by identical LTRs. The internal portion encodes the 778-aa Gypsy-1_CR1p (pos. 37-2370) and 1331-aa Gypsy-1_CR2p (pos. 2664-6656) proteins. Gypsy-1_CR1p includes the gag-like domain. Gypsy-1_CR2p is composed of the protease, reverse transcriptase, endonuclease, and chromo domains. Gypsy-1_CR1p: MGQKSGGSAPPATKQKSAGATRTTHGKPTGATTAAGKRASDQTSDHVKSRRAIAQGAEMGAAKDTSDVMD DANVVSGGSPAGSGKRRIPGQHGSNQGSPGQGHRDSNGDTVMGEVVGPGAGGTRAGAAGTQPPASTLPPS ALNATDRRKRLMAAYLAAYARVNGHVQHYTRAAQPIVTADDVVRAHELATVMGTSLTLTNQTMLDYILDV AQNEALPPVPTTAGAPADAPAGPMPAGGGNRAVLPTAVTPMDPVMAEIKQSLTRLDTALTDLKLQAQHDR KELEDLIALNAPPPAPATDTDLTNTASADSSSTSESEPSEAVDDEPSEVEPPAAEPPVQAAAPAADAPPP IRLLAFGAKPAAAKTAPTSTDQHRRRRQKYVSLGVSRFRQSPQYVPLRDDLYRHQNRASIKAFTKAFVKS VDAYLTAKRLDKMQALDELRAYEAMDIEMPLQYLRGENAEKLTENDRRRFYTQRITAPPTYAAAAAAAPS TIDEVIAQRDQVGTGGTGKKPKVPEPQKFSGVTDKHITCTTTWFDTFVEYCDEQKLEPSRHLLFFCTGTA QEWMVGYRHDMQLAKMAITTSRLRTAFLQQFGDVRRHTPAEARRRLMMLEHKQQPGERIATYTQRFRLIA RDARDMAELDRIEHYMNGLAAQFQAVCRTDSEGKDWTSLDSLVSYALGQESRKTQSKGATLAIANTSRPP FRSRPRKQGCSTGGGGGGGGGGYGGKRPGGGARDSGKPKKIRADRNTCRHCFEHFANGFPAQHLQDCAVL KRKKAMAA Gypsy-1_CR2p: MRSFCLSVTFIPRIGCGGRNPLVSRAVRAVDSIRGSLPHVQERKPTDTSAVFVAPQWPELEQYFTKSGFR LLKSYPTGTQLFTIAGSNLTTLAAPWPVQLWYDPPEPDAKLSAIAPKVSYTMTFRGRAGHTDVTTLVDSG ACTVGTADGYISQKAATQMGLRATSSPTPAVTLADGTRKALGGVVQTRLQMGAYHGTVHLLVLPDTVTGA QIILGTDWLNRHGALMDWESHTLTLRRGHKRVALRPAYTESPDMLAGSVYADPMQVMDYVRALLHDASTP RNLISKNEFARCVTTYGEHAFLAVVRWPDPTDEAWTPTCALAAATLPTLGDTGLIPAHDLQNLLTEHADV FEELKGIRKDTTGISHTIPLVEGAHPPSKRMYRLSQGETTEVNKQVADLLAKGFIEPSNSPFGAPVLFVQ KKDGTLRMCLDFRALNKLTVKRNYPMPNIQDLFDQLEGAKVFSSLDLQSGYYQIPITKEDQEKTAFITPK GQYQFKVLCFGLTNAPASFQATMSKIFKKQLGKTVLVYLDDILVFSKTPEEHLAHLREVLGVLREHEFKA KLPKCDFNKSELKFLGHIVGRHGVRVDEDKVKVVKDWATPTNLKQLRSFLGLANYFRRFIQGYSSLVAPL MALTGTKVPFVWTPECQAAFEGVKVALTSAPVLALPRFDLPFEVWSDASIYGTGAVLLQDGKPVAYTSAK FSSAEHNYTTTDQECLGVIHALTEWRCYLDGASHVTLVTDHQPLTYLQDQKSSNLLSRRQARWMEFLSRF SFTWEYRPGRINVADPISRIWEPMCAALTRSEISSDLLDRIRKGYSGDSLFSDSRASASLQLKTSAGLWY RDTQVVIPAADGLRELILTEFHNSPTAGHRGARRLKEAISRRYWWPRLDADCTEYVASCPDCQRNKPSNQ KPAGKLQPLPIPEANWDSVSLDLITKLPTTLAGHDAIVVFVDRLSKMTHFAPTHSDVDAEELAEIFLQYV FRHHGLPINLVSDRGSVFTGRFWKELFSRLQTKLHFSTAYHPQTDGQTERMNRLLEETLRHYIGPLQDDW DKHLPLIEFAINNSQSGSTGATPFELNYGRRPRVPGDLALPSSNVPAAQNFSDAMRQRMAHAKKCLRAAQ DRQRVATDSCRRDSKFDVGDDVLLSTKNIKLRIPGAAKLMPRYIGPFKIQRRIGAVAYELALPPGYKIHN VFHVSLLKAWKPGQAYNPPPAILEDNGDTYWSVESLLLHRDRKCGRKTLREFLVKWEGYGPEHNSWEPEA NLRESAPLEEAIEEYLARTATKQAAREKRINTVAQRRADRKAAATQRYATRKATPPAAPTKAPRQTRGRA T
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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