Repbase Reports |
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| 2004, Volume 4, Issue 11 |
| November 30, 2004 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 289 |
CR1-5_SP |
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A family of CR1 non-LTR retrotransposons - a partial consensus sequence. |
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Submitted: 00-Nov-2004 |
Accepted: 30-Nov-2004 |
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Key Words: Non-LTR retrotransposon; CR1 superfamily; CR1-5_SP |
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Source: Strongylocentrotus purpuratus |
Organism: Strongylocentrotus purpuratus |
Taxonomy: Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: CR1-5_SP, a family of CR1 non-LTR retrotransposons in the sea urchin genome |
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Journal: Repbase Reports 4:(11) p.289 (2004) |
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Abstract: CR1-5_SP is a family of CR1 non-LTR retrotransposons. The consensus sequence was reconstructed from 10 copies 99% identical to it. The 5' terminus of CR1-5_SP is not known. The consensus encodes the 1047-aa CR1-5_SPp protein (pos. 1-3141) that includes the CR1-like reverse transcriptase domain. The 3' terminus of CR1-5_SP is composed of the (TCTA) microsatellite. CR1-5_SPp: PSQRVNIELCCEITVSADKLAPNMLDNFGIIVVLSVIASLPHFIAESRPALLAGVTMEFQLVQN SIDTERYSDQYRYTKDELLSLRNTSHSRLPDNVFARIKELGIDKRRGCRAGSHKWRKIAVVEGR RRRTPKPPGVRAPQLIPIKTITTVSTDRQSQGNLPTIYMCNPRSLNNKLDEFSVVVHELCCDVC VVTETWFRADQPESDFAVDDYLVFAKSRDSRRGGGVAIYAKPESMPKTVNFLPPHPHHEVIWLQ LRPKRLPRDISCLYVAAVYSPPDNDCVNDLIQYLVNAIDDIKTRHGDAGVVILGDFNRADTSEL TSTCNLRQVVRKATRGTAILDLILTDIHQWYSEPEILSPLGLGGDHNAVLWKPKLNKTNSKNKA VRKFVRPMKDSAIREFGQWISQHTWDDVMASSSAQEKCDKLYASLQNAMDEYLPMKSVKMHPRD KPWVTPYLKSLIGQRQKAFSNDRTEEWKRLRNKVQNKKTELKKNFYKDRVLKLKRENPSSWYKH LKIMTSSKTASNIIIPESPELDDLAIADCVNDHFANVSQDIPELDLQSLPAYLPTPKPQLTVQP HEVYKELNRIKPGKSSGPDGIPARIVKEFAVELASPLCEVLNSSYHSGSVPSQWKGAIIAPIPK EKAASSIDKQRPISLTDHFAKIAEVFIYRKLLADVRHQLDPKQFGARAGRSTTHCLVEIYNFLC KRAELPSNVTSIVSTDFSRAFDRVDHTILIRKLITLEVHPWVIVWICSFLTDRQNQVRYHGELS STRSMTAGVPQGTRLGPLLFLVLIDDALRESEVERWKYVDDMSLASAEPSNQHGQFMQNVLVNL EEWCNQNNVRLNPKKCNIMRVTFSKTPLPDRDFSLCNDVLQEVSAVKLLGVILQRDLKWNDHVS VTISRASSRLYMLRRWKEFHLPAADLVTVYVGFVRPLLEYACPVWHSSLTCAQSAALERIQKRA LRLIFPGTSYNTSLDLARIVDLETRRKTLCINFATKASRSEVGSDWFTENNPTRNLRKNKRYRE PRCRTNRYQNSPIPFMTKLLNFN
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Derived: [1] (consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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