Repbase Reports

2003, Volume 3, Issue 9
September 30, 2003
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 181

HARBINGERN8_DR

HARBINGERN8_DR is a nonautonomous DNA transposon - a consensus.

Submitted:
30-Sep-2003
Accepted:
30-Sep-2003
Key Words:
Nonautonomous DNA transposon; HARBINGER superfamily; 3-bp TSD; 25-bp TIRs; Dr000419; HARBINGERN8_DR
Source:
consensus
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[2] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
HARBINGERN8_DR, an ancient family of Harbinger-like nonautonomous DNA transposons from zebrafish.
Journal:
Repbase Reports 3:(9) p. 181 (2003)
Abstract:
HARBINGERN8_DR copies are flanked by 3-bp target site duplications generated upon their integration in the genome. It has 25-bp terminal inverted repeats (3 mismatches, including 2-bp termini). The consensus sequence is 78% identical to the unclassified Dr000419 repeat [1]. The HARBINGERN8 family is several millions years old, its copies are ~94% identical to the consensus sequence. There are ~100 copies of HARBINGERN8_DR in the genome. HARBINGERN8_DR is classified as a putative member of the Harbiger superfamily based of the 3-bp target site duplications and the 5'-GGC terminus that are common for different Harbingers.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Bao,Z.
    Dr000419, unclassified and uncharacterized repeat.
    http://www.genetics.wustl.edu/fish_lab/repeats/

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