Repbase Reports

2003, Volume 3, Issue 9
September 30, 2003
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 179

HARBINGER2N_DR

HARBINGER2N_DR is a nonautonomous DNA transposon - a consensus.

Submitted:
30-Sep-2003
Accepted:
30-Sep-2003
Key Words:
Nonautonomous DNA transposon; HARBINGER superfamily; 3-bp TSD; 13-bp TIRs; HARBINGER2_DR; HARBINGER2N_DR
Source:
consensus
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
HARBINGER2N_DR, a young family of nonautonomous Harbinger DNA transposons from Danio rerio.
Journal:
Repbase Reports 3:(9) p. 179 (2003)
Abstract:
HARBINGER2N_DR copies are flanked by 3-bp target site duplications (usually CWG) generated upon their integration in the genome. It has perfect 13-bp terminal inverted repeats similar to other HARBINGERs. There are approximately 100 copies of HARBINGER2N_DR harbored by the zebrafish genome. The consensus sequence was reconstructed based on 25 copies which are ~0.6% divergent from the consensus sequence. HARBUNGER2N_DR elements were derived from the autonomous HARBINGER2_DR transposon.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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