Repbase Reports

2003, Volume 3, Issue 8
August 31, 2003
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 157

MuDR2_TP

MuDR2_TP is an autonomous DNA transposon - an incomplete sequence.

Submitted:
31-Aug-2003
Accepted:
31-Aug-2003
Key Words:
autonomous DNA transposon; MuDR superfamily; transposase; MuDR2_TP
Source:
consensus
Organism:
Thalassiosira pseudonana
Taxonomy:
Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
MuDR2_TP, a family of MuDR DNA transposons from diatom Thalassiosira pseudonana.
Journal:
Repbase Reports 3:(8) p. 157 (2003)
Abstract:
MuDR2_TP is an incomplete copy of the MuDR transposon. It encodes a 987-aa portion of the MuDR2_TPp transposase (pos. 317-3274). Approximately a 200-300 aa long C terminal part of the transposase is missed. There is a 65% identity between MuDR2_TP and MuDR1_TP. MuDR2_TPp: MENALDSRTSKIAMPMHNSQGRTTYGDKLENLNRLRKSVKEWSSPPILLTVAESMTSDQFIEIDVAETIV SRAEGGGYVPRENKRNDNNCYWLAKVCDTNDENYRKSEIIPGIKSACRGSGFKVNCHWVSNRNFIEVKCN RHKHFDEEKSMSHNKNYGGNVNGKGQPKEAKKKSEKPVIGDEDNDEICPVHWRLYWDKKHKRWFLPKLQV GVKVHRGHKHKNLSDIRLETKDLISATDVQLAHDSLNSHIRTAPTHRLLETRTGETLAWHQIYHLKRKQQ MEKQQNQTTACDHLIHYLTTNNDISCVFLFANPKTNLITIKKKKDKRNSALSIEEVGTQLLEDVTDSPSI YAKSMKERYQLIHTETGELLLATAWTTYNQRKKFDMFPEVVSGDDTEGTNSEKRPLYTLLGKDQNGNIFP IAWAFMPSKSLWAYDWFFSQAMPLLHPGNAIKRVEIILTDADPQETSAIENHVGGNLMPSKAQCHLFSKA LHRWCAWHRINRNFTQHPKYKSTLAKMKNSCILSRVEVDVLERWLWYFIKNYESEEEVDLCRQLMDVYLN DDEQDTHIGQIDDDDRKLLLEFITKSFHSNQRKLFRVHFDHSMHIGNQTTSANEGYHSGLKSSDLGPNGN DPMHITAMKIVKMTDSKEGEKSQKAAYDSNSTYGKAKDRKRTVQQFSTVCNSNVSKEYASSVDFFQFRAN EYTFLVKYDYDKVDNDETGGGSKKGEWSVDDTKKLEALRGTFLGKGKGTTPEYKTILHESMKYIIPRFEH TRVVELKKLPDGTWVIVCSCGLFKTMGYACRHMYKVLKRDPTSSDAKIRWHNGYCEDYGRNNELTKAYME LRSVNLPGVSVTDNEVTLIKTSMQIGCGERDEGFFSRSLNKLCLRGRSTFWHENADRFHQVLQGVTHYIV KAAANTAPTQESDTAPMIAGLAATCFGPARMIHSTSVRAVPSQSVSATQNSSSSVPMDDTGVDSSGDSNA RKWSQKT
Derived:
[1] (an incomplete sequence)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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