Repbase Reports

2003, Volume 3, Issue 8
August 31, 2003
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 153

EnSpmN1_DR

EnSpmN1_DR is a nonautonomous DNA transposon - a consensus.

Submitted:
31-Aug-2003
Accepted:
31-Aug-2003
Key Words:
Nonautonomous DNA transposon; En/Spm superfamily; Dr000060; EnSpmN1_DR
Source:
consensus
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[2] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
EnSpmN1_DR, a nonautonomous En/Spm DNA transposon from zebrafish.
Journal:
Repbase Reports 3:(8) p. 153 (2003)
Abstract:
EnSpmN1_DR copies are ~1% divergent from the consensus sequence. This element is characterized by 10-bp terminal inverted repeats and 2-bp targets site duplications. This nonautonomous family belongs to the En/Spm superfamily. This classification was made based on detection of En/Spm-like transposases in the zebrafish genome that are internal portions of sequences similar to EnSpmN1_DR (see EnSpm1_DR). RnSpmN1_DR is a composite DNA transposon, it carries copies of the DNA-8-2_DR and TDR15 DNA transposons (pos. 1850-2625 and 5233-5747, respectively).
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Bao,Z.
    Dr000060, an unclassified and uncharacterized repeat.
    http://www.genetics.wustl.edu/fish_lab/repeats/

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