Repbase Reports |
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| 2003, Volume 3, Issue 7 |
| July 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 136 |
Harbinger3_TP |
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Harbinger3_TP is an autonomous DNA transposon - a consensus sequence. |
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Submitted: 31-Jul-2003 |
Accepted: 31-Jul-2003 |
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Key Words: DNA transposon; Harbinger superfamily; transposase; DNA-binding protein; Harbinger3_TP |
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Source: consensus |
Organism: Thalassiosira pseudonana |
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Harbinger3_TP, a family of autonomous Harbinger-like DNA transposons from diatom Thalassiosira pseudonana. |
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Journal: Repbase Reports 3:(7) p. 136 (2003) |
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Abstract: Harbinger3_TP copies are ~95% identical to the consensus sequence, they are flanked by 3-bp target site duplications. This transposon has 33-bp terminal inverted repeats (3 mismatches), and one internal palindrome (pos. 144-243). Harbinger3_TP encodes the 449-aa Harbinger3_TP1p transposase (pos. 507-1853) and the 399-aa Harbinger3_TP2p DNA binding protein (pos. 3679-2483). Harbinger3_TP1p: MSSSSTMSSDSDDTMDRFMASQLSIDGTGDSNLDRDIPPQRKRNSNRFAFQFGDYLDCNYYRKFLCQDIR DVTYEKSQDRKSVFRSHFRVPLKTIDDLTEMHIRNGWVRYTGRVRTNFQLSIRTQLFIMCALEHMGNRKP HCQFETETNMSASSHLHFFNNFIVNMYSVRSEYVFYPRTMEELQVTVHDYESQHLPGAGGSIDVVHVKWS NCPAGDYNKCKGKESFPSVAFECVTNNRRRVLGISPIQFGARSDKHIVRFDPTVELIKKQWYKDVEWEYY TSDGELKKDKGIYFICDGGYLRWKSLICPYAGSxEIGQRGYFNTNLESIRKDVECTFGILKKRWRILDYG LHYYNMKKCEMVFTVCCIMHNILLDVGEDQGLNYVNPVGRGGPIGRDGLFLEGPVELQQRVGRDAITLRG MKAADRADALRWMARRDLLAAHLEYCKRH Harbinger3_TP2p: MIYSAAVTRFLANSIAFLSPISVTSTEGGGGGGREGLRRGRRGVGEASTDVTPAKRPSSAPTTTSQRKKA RQPAPKSTSQRKKAKQPSLPTRTSPRLHPQKDAQKELAEPRVLLSTIAEDPPSPSDSDKSPDILAETQET VTIVPEPQLGGDADDDARDDDDVPDGVDDASGDALPPLENVNVSADAQVPSQLTQMASPNVQDRETEFSI CNSPGEFSALQEASVDDPYHRMLVESAIDYSFGDRVHYFLGGARINNKFRLSVETCVLGEAGKIVCEDMC AKVASLKVQLAKKYEDIMRSLDPGLFESENIREDMCKRMSGGRPNKSSSETTTFGEKKMWEKWKQMKMEM KKIFTCLPVTYHKMKSGTQLYEVYDNVIREHWKEQFVSFAVERFKMSPF
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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