Repbase Reports

2003, Volume 3, Issue 7
July 31, 2003
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 134

Harbinger1_TP

Harbinger1_TP is an autonomous DNA transposon - a consensus sequence.

Submitted:
31-Jul-2003
Accepted:
31-Jul-2003
Key Words:
DNA transposon; Harbinger superfamily; transposase; DNA-binding protein; Harbinger1_TP
Source:
consensus
Organism:
Thalassiosira pseudonana
Taxonomy:
Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Harbinger1_TP, a family of autonomous Harbinger-like DNA transposons from diatom Thalassiosira pseudonana.
Journal:
Repbase Reports 3:(7) p. 134 (2003)
Abstract:
Harbinger1_TP copies are ~95% identical to the consensus sequence, they are flanked by the TAA 3-bp target site duplications. This transposon has 43-bp terminal inverted repeats (1 mismatch). Harbinger1_TP encodes the 520-aa Harbinger1_TP1p transposase (pos. 143-1702) and the 492-aa Harbinger1_TP2p DNA binding protein (pos. 3446-1991). Harbinger1_TP1p: MALLNGLMEADVSPIHISRRRPIKDQSHQQPSFGDYFYAMTMSSNHSKRRDKYEQYLADEDEFDLHERAK RRRILIGYASAIATIATTSVQSTSGKALSIHRGRVPGAKTIKRERLDVAQSCHDMNDRHFRRRYRMDKES FWILLDIIEPHLPSTGESRVRGSICSIPNGPITHTARLSMALRIAAGGDPLDIAVNHGVSDAEPTESFWL VVDAVHKSFQLDINFPTSHEAQYELAQEFRSKSTIGITNCVGAIDGILMWIHKPTDQDCDVLGFRQTKFF CGRKKKFGLNMQAVCDARRRFLWVELRYPGSTSDFFAFDQSSLKCQLERAGFLREGLCLFGDAAYANSSY MCVPFRSATGTHDHFNFFQSQLRINIECAFGMLVHRFGMLRKAWPVNVSIAKTNSAILALCKLHNFCIES NSGNDISTADVGDSSHIMMDGGMLLPRIDRVDGNEDTVRWMYDDTEDRLNALLDGGDHRDDHADADRRRY RRHREVTPRHLIHNYIAENGFRRPPIRDIR Harbinger1_TP2p: MSSSTAAAATDPTDDSGPPAIVDTAINTMAQSQSTLEDDGSTMTYSSVRHITSAHDGQPLSTETLLEGDG SSGQVQLYVENDVDTPPDNRIKFIIFLAKTIGIDVESDLKDIADRRGKKKLVQFTKTVLYREIMRRDPNA KVNKNNTSLDAMWNLLPALTDERDVVYIRSQYSSIRQRLVEDVEEREETIARRQDTDVWRFFLLIPKFED LRRAYAYSQTPSHREMLDGRETYKSRFLKLMVQYFNDSNISVSTPSQPSLHSCFSEPILCDKGDFELTEE KAKKILADSRRHLTTMINDWERSGNGSNQQRLEEDFFDELGDFDTWGRFDPGTCDGDDRSNFLRHLPVYW LMVWHLCDEGDLLRFTCAQLREEHSASSEITPGGVSRGSGTSSASKTGQKTAQQTYELQKELVSTVKDIG KAVAKFSDDTTYERASKIRRLDMLKDTRYEVYKDSKSKRNTAEERAVAAEYVKDLDERIATMEMELAVER GA
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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