Repbase Reports |
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| 2003, Volume 3, Issue 7 |
| July 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 124 |
Copia3-I_TP |
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Copia3-I_TP is an internal portion of the Copia3_TP LTR retrotransposon - a consensus sequence. |
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Submitted: 31-Jul-2003 |
Accepted: 31-Jul-2003 |
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Key Words: LTR retrotransposon; Copia clade; 5-bp TSD; reverse transcriptase; Copia3_TP; Copia3-LTR_TP; Copia3-I_TP |
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Source: consensus |
Organism: Thalassiosira pseudonana |
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Copia3_TP, a family of copia LTR retrotransposons from diatom Thalassiosira pseudonana. |
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Journal: Repbase Reports 3:(7) p. 124 (2003) |
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Abstract: Copia3_TP is a young family of copia-like LTR retrotransposons. Copia3-I_TP, an internal portion of Copia3_TP is flanked by 100% identical Copia3-LTR_TP LTRs. The internal portion is partial because of deletions. There is no tRNA-like primer binding site in Copia3_TP. Instead, this retrotransposon uses self-priming by the 12-bp TACTTCGAAGTA palindrome present at the very 5'-end of its internal portion.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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