Repbase Reports

2003, Volume 3, Issue 7
July 31, 2003
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 124

Copia3-I_TP

Copia3-I_TP is an internal portion of the Copia3_TP LTR retrotransposon - a consensus sequence.

Submitted:
31-Jul-2003
Accepted:
31-Jul-2003
Key Words:
LTR retrotransposon; Copia clade; 5-bp TSD; reverse transcriptase; Copia3_TP; Copia3-LTR_TP; Copia3-I_TP
Source:
consensus
Organism:
Thalassiosira pseudonana
Taxonomy:
Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Copia3_TP, a family of copia LTR retrotransposons from diatom Thalassiosira pseudonana.
Journal:
Repbase Reports 3:(7) p. 124 (2003)
Abstract:
Copia3_TP is a young family of copia-like LTR retrotransposons. Copia3-I_TP, an internal portion of Copia3_TP is flanked by 100% identical Copia3-LTR_TP LTRs. The internal portion is partial because of deletions. There is no tRNA-like primer binding site in Copia3_TP. Instead, this retrotransposon uses self-priming by the 12-bp TACTTCGAAGTA palindrome present at the very 5'-end of its internal portion.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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