Repbase Reports |
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| 2003, Volume 3, Issue 7 |
| July 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 122 |
Copia2-I_TP |
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Copia2-I_TP is an internal portion of the Copia2_TP LTR retrotransposon. |
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Submitted: 31-Jul-2003 |
Accepted: 31-Jul-2003 |
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Key Words: LTR retrotransposon; Copia clade; 6-bp TSD; reverse transcriptase; Copia2_TP; Copia2-LTR_TP; Copia2-I_TP |
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Source: Thalassiosira pseudonana |
Organism: Thalassiosira pseudonana |
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Copia2_TP, a family of copia LTR retrotransposons from diatom Thalassiosira pseudonana. |
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Journal: Repbase Reports 3:(7) p. 122 (2003) |
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Abstract: Copia2_TP is a young family of copia-like LTR retrotransposons. Copia2-I_TP, an internal portion of Copia2_TP is flanked by 99% identical Copia2-LTR_TP LTRs. Copia2-I_TP is not complete because of a ~500-1000-bp deletion. Copia2_TP is characterized by 6-bp target site duplications (usually copia-like elements induce 5-bp target site duplications). There is no tRNA-like primer binding site in Copia2_TP. Instead, this retrotransposon uses self-priming by the 12-bp CGTTTATAAACG palindrome present at the very 5'-end of its internal portion.
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Derived: Positions 1807 5306 Accession No scaffold_265 JGI |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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