Repbase Reports |
|---|
| 2003, Volume 3, Issue 6 |
| June 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 119 |
piggyBac1_CI |
|||
|---|---|---|---|
Autonomous DNA transposon piggyBac1_CI - a consensus. |
|||
|
Submitted: 30-Jun-2003 |
Accepted: 30-Jun-2003 |
||
|
Key Words: Nonautonomous DNA transposon, piggyBac superfamily; TTAA target site duplication; transposase; piggyBac1N_CI; piggyBac1_CI |
|||
|
Source: consensus |
Organism: Ciona intestinalis |
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: piggyBac1_CI, a family of autonomous piggyBac DNA transposons from the sea squirt Ciona intestinalis |
|||
|
Journal: Repbase Reports 3:(6) p. 119 (2003) |
|||
Abstract: piggyBac1_CI is a family of autonomous elements related to the hAT superfamily. The consensus was reconstructed from 5 copies. It encodes a 773-aa piggyBac1_CIp transposase (positions 263-1981). A zinc finger is present at the C-terminus of piggyBac1_CIp. piggyBac1_CI has 13-bp terminal inverted repeats and is flanked by the TTAA target site duplications. A piggyBac1_CIp-like transposase was also involved in propagation of the piggyBac1N1_CI nonautonomous element. piggyBac1_CIp: MFSATAAAEILMDAGSDLSDLESDHDEDDNVGSFIVPNVADISDSDSESSDDSLPPPPPPANVWKSSITQ QSLNSFLGEHGPSSHACVSNDDSPLEYFRLIFTDELLTLVVEETNRYAAQYLQKTPLSSKSRAHNWKPVD AEELSLFLGLTLLTGIVHKRGKLESYWSKNSMIETPFFGKCMSRNRYQAITGFLHFNDNEKLAENNDNDK LYKVRPVYDLIVARWKALYNLGEHISIDEGMMKWRGRLGFRVYNKDKPIKYGIKSYILADSHSHYCWNLD MYHRVQKTLKETVSQILTSKCHFLWHSLYMDNFYNSVSMSQMLLAFQIHSVGTLRSNRGEPREIRTPPNQ MKKGDIIARQNQSVTVLAWKDKRVVKAISTKHDASVTTITRRQRRGGEKESVEKPVCIADYNLHMSGVDQ VDQMISYYPCHRKSLKWTKKVFFYFMTISVHNAYILYKSKSSAKSCKTLYSFILTLVSQLCQQDRLQPQI DDENLAGPPPKSPRIDSTKRLKGGFKKHVIALYLQLKKRQQRKDHVVRAWKTVAERTRYYCAYCNVPLCV IPCFTKYHACAEF
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||