Repbase Reports |
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| 2003, Volume 3, Issue 6 |
| June 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 107 |
HAT5_CI |
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Autonomous hAT-like DNA transposon HAT5_CI - a fossilized copy. |
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Submitted: 30-Jun-2003 |
Accepted: 30-Jun-2003 |
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Key Words: Nonautonomous DNA transposon, hAT superfamily; 8-bp TSD; transposase; BED zinc finger; HAT5N_CI; HAT5_CI |
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Source: sea squirt |
Organism: Ciona intestinalis |
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: HAT5_CI, a family of autonomous hAT DNA transposons from the sea squirt Ciona intestinalis |
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Journal: Repbase Reports 3:(6) p. 107 (2003) |
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Abstract: HAT5_CI is a family of autonomous elements related to the hAT superfamily. It encodes a 608-aa hAT transposase, HAT5_CIp (pos. 256-2079). The N-terminal portion of HAT5_CIp (pos. 10-55) is the BED zinc finger. HAT5_CIp: MSAIAKVSSSKVWDYFNVSEGSVKCQLCKNLVSQGSTSSAQKNTSNLWSHLRSKHREVEVYEQAHCHKIG KSSKVVQPTLFQSFDNSRKWSNTDGRSRNLDKLIIEMIATDIQPFSVTNDIGFKRLLATAEPRYNLKDEK YYRTEMLPKVHLKVVDKIKNMLKEENAGESLSFTTDCWSGSTESLMSLTAHFIDNQWKRKQLVLSVKSMS ESHTGDYIGKVFLDILSQWEIDRSRVLLVLRDSGANVVKGMRVADVSDFSCCAHTMQLIIKEGIESQRVV IDIVAKLKRCATHFNHSTLAKKRLHAIQNQVGLPVHSIIQAIPTRWNSTLHMLRRMLEQKHALSIYASEY GHFSLPNTYEWELVAKLVALLIPFETITLEISHSEASASCILPSIAVLKALLQSDNEATFGIGTIKGTMC ESLLRRYCNVENVKPVVIACLLDPRFKDKPFSSEIVLGRAKDWLINEVKEQDQGEEPVAAKKQKQSSDSE NDLLSNLYKNVLGQGSTDNNECESTDVQTEINKYLSEPLIDRSTGHPLDWWKNNETRFVILAKLARKYLN PPPSSVPSERDFSTIGNIYEDKRSRLTGEHAEQLCFLYYNLHLLEYNY The nonautonomous HAT5N_CI is a derivate of the HAT5_CI transposon. They share common ~100-bp 5' and ~140-bp 3' termini, respectively.
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Derived: Positions 115974 113764 Accession No AABS01000231.1 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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