Repbase Reports |
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| 2003, Volume 3, Issue 6 |
| June 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 103 |
HAT3_CI |
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Autonomous hAT-like DNA transposon HAT3_CI - a fossilized copy. |
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Submitted: 30-Jun-2003 |
Accepted: 30-Jun-2003 |
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Key Words: Nonautonomous DNA transposon, hAT superfamily; 8-bp TSD; transposase; HATN5_CI; HAT3_CI |
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Source: sea squirt |
Organism: Ciona intestinalis |
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: HAT3_CI, a family of autonomous hAT DNA transposons from the sea squirt Ciona intestinalis |
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Journal: Repbase Reports 3:(6) p. 103 (2003) |
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Abstract: HAT3_CI is a family of autonomous elements related to the hAT superfamily. HAT3_CI encodes a 428-aa remnant of the HAT3_CIp transposase (positions 661-1944). HAT3_CIp: PEDSGQGRNCCVLSHQSRPCRAQERWQKVVKEAFLEAADSLFNNFNNKTKIVKSIEEVQLSRSTITRRCE VMAVDVEEQLGKDVDLCQFFFLQFDESTDMVDVAELRVFLRMVFEDMSAKEELLTILPLKRHTRGEDIFN TFKEFVNEKKLPLCKLISITTDGAPAVIGRTNGFIALCKQSESFPDFLNYHCLIHQQALCCNILNMKEVM DVAVKIVCSIRARSLQRRLFRAHLEENDFQHTDLLLQTNVRWLSRAKYLARFIELLLEIKTFLRLSNRVE YHTKLDDHQWLLDLSFLTDLTGELNVLNIELQGKDKDVANMMSSVNTFKSKLQLISSRLQRDDLRNFPYM QAELLRQGKRVTQLKTACYKEQVQRILLEFERRFADFSSIEPVVLCVTHLLQVLMLVASLPKSNHFLAWK SPLLRKKF HAT3_CI is flanked by 15-bp terminal inverted repeats (4 mismatches) and 8-bp target site duplications. The nonautonomous HATN5_CI is a deletion derivate of an autonomous element 80% identical to HAT3_CI.
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Derived: Positions 10081 7580 Accession No AABS01000855.1 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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