Repbase Reports

2003, Volume 3, Issue 6
June 30, 2003
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 100

Gypsy3-LTR_CI

Nonautonomous DNA transposon Gypsy3-LTR_CI - a consensus.

Submitted:
30-Jun-2003
Accepted:
30-Jun-2003
Key Words:
Nonautonomous DNA transposon, mariner/Tc1 superfamily; 4-bp target site duplication; Gypsy3; Gypsy3-LTR_CI
Source:
consensus
Organism:
Ciona intestinalis
Taxonomy:
Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Gypsy3-LTR_CI, a long terminal repeat of the Gypsy3_CI family of Gypsy-like retrotransposons from the sea squirt Ciona intestinalis
Journal:
Repbase Reports 3:(6) p. 100 (2003)
Abstract:
Gypsy3-LTR_CI is a long terminal repeat of the Gypsy3_CI LTR retrotrasposon. There are ~100 Gypsy3-LTR_CI elements in the C. intestinalis genome. They are ~95% identical to the consensus sequence, and represent several subfamilies that are even younger. The Gypsy3-I_CI internal sequence is not known yet, although ~50-bp PBS encoded by it is 90% identical to the Gypsy2_CI PBS.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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