Repbase Reports |
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| 2003, Volume 3, Issue 3 |
| March 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 51 |
COPIA3-I_AG |
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COPIA3-I_AG is an internal portion of the COPIA3_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 31-Mar-2003 |
Accepted: 31-Mar-2003 |
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Key Words: LTR retrotransposon; Copia clade; 5-bp TSD; reverse transcriptase; COPIA3_AG; COPIA3-LTR_AG; COPIA3-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Pavlicek,A., Kapitonov,V.V. and Jurka,J. |
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Title: COPIA3_AG, a family of nonautonomous, copia-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(3) p. 51 (2003) |
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Abstract: COPIA3_AG is a young family of copia-like LTR retrotransposons. COPIA3-I_AG, an internal portion of COPIA3_AG is flanked by 99-100% identical COPIA3-LTR_AG LTRs. The A. gambiae genome contains about 14, >98% identical, copies of COPIA3-AG internal sequence. The consensus sequence encodes the 500-aa COPIA3_AGp protein (positions 41-1540). The protein seems to be truncated, so the COPIA3_AG family is probably nonautonomous. COPIA3_AGp: PKERFRKMERLGIAKLNGGNYSVWKTKVEFLLIREELWQYVISDGPGNTTASPTTEAIGAVWKSGDQKAR ATIGLLLEDNQLNLIKDCKTAKATWEKLRGHYEKATLTSKVSILKNICEKRFSDGEDIEQHIFEMEELFD RLTLTGEELSKSLQVAMVLRSLPQSFSVLTTALESRSDDELTLDLVKTKVVDEVAKRGNRGCCDSVLKTI VKKNQMLCHFCQQPGHKRKDCLILMEKRSRDLKQSEGQHGMKRSQLCVQTTDEETLEQEYSFTMRGFTAN SWIVDSGATSHMCIDRSCFVELDERYQQDVILADGTTARVEGIGSCRITTLSPEGKTSRVTLNDVLFVPK LETNLVSVKKLTAKGAVILFDMSGCRIVKDQKVIALATISNGLYSLKTRMQNVLTRKNARYRSIAKCLLM PMDLEYRNVQQKEEGLMLRKGELRKRKLRKGESCSFVHCKDRTMSSGSRIWVGCHGKDMFGRCEKSIPRN NEFQSVCCRS
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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