Repbase Reports

2003, Volume 3, Issue 3
March 31, 2003
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 51

COPIA3-I_AG

COPIA3-I_AG is an internal portion of the COPIA3_AG LTR retrotransposon - a consensus sequence.

Submitted:
31-Mar-2003
Accepted:
31-Mar-2003
Key Words:
LTR retrotransposon; Copia clade; 5-bp TSD; reverse transcriptase; COPIA3_AG; COPIA3-LTR_AG; COPIA3-I_AG
Source:
consensus
Organism:
Anopheles gambiae str. PEST
Taxonomy:
Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles
[1] Authors:
Pavlicek,A., Kapitonov,V.V. and Jurka,J.
Title:
COPIA3_AG, a family of nonautonomous, copia-like LTR retrotransposons from African malaria mosquito.
Journal:
Repbase Reports 3:(3) p. 51 (2003)
Abstract:
COPIA3_AG is a young family of copia-like LTR retrotransposons. COPIA3-I_AG, an internal portion of COPIA3_AG is flanked by 99-100% identical COPIA3-LTR_AG LTRs. The A. gambiae genome contains about 14, >98% identical, copies of COPIA3-AG internal sequence. The consensus sequence encodes the 500-aa COPIA3_AGp protein (positions 41-1540). The protein seems to be truncated, so the COPIA3_AG family is probably nonautonomous. COPIA3_AGp: PKERFRKMERLGIAKLNGGNYSVWKTKVEFLLIREELWQYVISDGPGNTTASPTTEAIGAVWKSGDQKAR ATIGLLLEDNQLNLIKDCKTAKATWEKLRGHYEKATLTSKVSILKNICEKRFSDGEDIEQHIFEMEELFD RLTLTGEELSKSLQVAMVLRSLPQSFSVLTTALESRSDDELTLDLVKTKVVDEVAKRGNRGCCDSVLKTI VKKNQMLCHFCQQPGHKRKDCLILMEKRSRDLKQSEGQHGMKRSQLCVQTTDEETLEQEYSFTMRGFTAN SWIVDSGATSHMCIDRSCFVELDERYQQDVILADGTTARVEGIGSCRITTLSPEGKTSRVTLNDVLFVPK LETNLVSVKKLTAKGAVILFDMSGCRIVKDQKVIALATISNGLYSLKTRMQNVLTRKNARYRSIAKCLLM PMDLEYRNVQQKEEGLMLRKGELRKRKLRKGESCSFVHCKDRTMSSGSRIWVGCHGKDMFGRCEKSIPRN NEFQSVCCRS
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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