Repbase Reports |
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| 2003, Volume 3, Issue 3 |
| March 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 49 |
COPIA1-I_AG |
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COPIA1-I_AG is an internal portion of the COPIA1_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 31-Mar-2003 |
Accepted: 31-Mar-2003 |
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Key Words: LTR retrotransposon; Copia clade; 5-bp TSD; reverse transcriptase; COPIA1_AG; COPIA1-LTR_AG; COPIA1-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V., Pavlicek,A. and Jurka,J. |
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Title: COPIA1_AG, a family of copia-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(3) p. 49 (2003) |
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Abstract: COPIA1_AG is a young family of copia-like LTR retrotransposons. COPIA1-I_AG, an internal portion of COPIA1_AG is flanked by 99% identical COPIA1-LTR_AG LTRs. The COPIA1-I_AG consensus sequence was reconstructed based on multiple alignment of 4 copies. The consensus sequence encodes the 1323-aa COPIA1-I_AGp protein (positions 151-4119). MSESHVTIEKLNDQNYAIWKFKMELLLAREKVLTVVKDSKPASPDAAWIANDERARALIGLSLDDSQLIH VMQTSSSKDMWDALKGYHERSSLSSKIHVMRKMFATKMTEGGDISNHLKELCSLRLRLIALGEEMKDPSF VALMLSSLPKSFDGLIVALESRPDEDLTVDYVKGKLLDEGRRRADGADEDKALLSGGKNxTKFWKDRKLT TNKEKQCHYCKKNGHIRKDCRKWAADKRSKLDGESVNVANEDNREEVCLFIGExNETGPWCFDSGATSHM TNDTSILKLIDKSKQSSISLANGDSIKSAGVGxCKLFSMDGNGKRKKVSLDxVCHVPSLTTNLLSVSKIT DNGFExxFDRxGCRVLKGKQVLLIGERKGGLYYLKQTEQAMLVDKNHEASCIHLWHRRFGHRDIEAIMKI ARNNLGSGLNINRCHVKSICGSCCEGKMSRDPFPNSSSSRTSGVGELIHTDLGGPFEVSTARGSRYFMTM VDDFSRYTIIYLxQNKCETENRIREYCxMMKTQFGHYPKVIRSDGGGEYRSNSLKEFFVDHGIVHQQTAP YSPQQNGVAERKNRYLVEMMRCMLAESNMDKVFWGEAITTANYLQNRLPSSLLESTPYEMWHGKNPSYEH LRVFGSEAFVHIPKEKRRKLDKKAEKLVFVGYADNQKAYRFVNLETKTITISRDAKFLEQCEIEKIGTKP KPTTSGGVVVLPLGSTPSLCRAEETTTRENIVQMEASAESSCIRESNMNDTVDxLDVTPYNSASDGELSD EPGAIEMHQSVRRSxRTTKGIAPVRFREESYMAGSSEQNEEPRNLKEVFVCAAREKWISAMENELKSHEE NGTWDALVELPAGRKVVGCRWIFKLKRNAAGQVIKHKARLVAQGYSQQFGEDYDQVFAPVTSHTTFRLML AIASKTQMKLRHLDIKTAYLYGDLDQELFMRQPPGYExKGKEHLVCRLKKSIYGLKQSARCWNQKLHGVL LEIGFQQSAADQCLYIKTEDGKRVYILVYVDDMIVGCVDETLIDSVYHALTEHFEMTDLGPVSYFLGMEV KxEKGNYSVSLEGYIEKLIRKFGLSEAKTAKTPMDEGFLKQQDSSSILKDSTQYRSLVGALLYISVCTRP DIAVSTGILGRNVSNPTESCWVAAKRVVRYLKATKHFKLTFNKAGSDLIGYSDADWAGDTITRKSTSGYV FFYASGAVSWASRKQTSIALSSMESEYISLSEATQEQMWLTRLMKDLGEHIENPVKIFEDNQSCICFVNS DRTNRRSKHIETKEHFVKQQCESRKMMLEYCPTEEMVADILTKPLGATKQRKFTEMLGLHGTR
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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