Repbase Reports |
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| 2003, Volume 3, Issue 3 |
| March 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 43 |
BEL7-I_AG |
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BEL7-I_AG is an internal portion of the BEL7_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 31-Mar-2003 |
Accepted: 31-Mar-2003 |
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Key Words: LTR retrotransposon; Bel clade; 5-bp TSD; PHD domain; peptidase A16; BEL7_AG; BEL7-LTR_AG; BEL7-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V., Pavlicek,A. and Jurka,J. |
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Title: BEL7_AG, a nonautonomous family of Bel/Pao-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(3) p. 43 (2003) |
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Abstract: BEL7_AG is a young nonautonomous family of Bel/Pao-like LTR retrotransposons. BEL7-I_AG, an internal portion of BEL1_AG is flanked by BEL7-LTR_AG LTRs. The BEL7-I_AG consensus sequence was reconstructed based on multiple alignment of 11 copies; they are less than 1% divergent from the consensus sequence. The consensus sequence encodes (pos. 393-2552) a 720-aa BEL7_AGp protein composed of the PHD and peptidase A16 domains (pos. 18-62 and 111-260, respectively). The reverse transcriptase and integrase domains are not present; therefore, this family is a nonautonomous one. BEL7_AGp: MTTKRNLTPFVDNDNGSCRLCSRIDDPNMVQCDECDRWFHMACAKLSRLPKADEPFLCIKCTKDYAKIKA PASTGSDQNTAIAALIEALKGSSLDTNTYLKRLTFDQLPDFDGKAKEWLKFKRAYEETTKQAKYTNVENM TRLQHALKGEAYKCVHRLFLEPDNVPEIITKLEEQFGRAELVYDELLKDVQNIRVENQHKIPDLSDAIQD MITNIKAINMPMYLQDHRLVNELACKLPTDRHLKWIEYKSTNIKPGVLPSLEDFGKWLLPQAKVLKELPK RPERPKHSMNVHQSSAHNTKRPFNHNHFGNAQNNSPATNTYARNAIDYTAQNCTAARERGPHPCEETHHR LHFTADAEENCHQEQKILYQIVPVVLRNEDKTLKTFALLDSGSSFTLIEEETANQLQLEGPTEPITMTWT QNLSIREKESRRVSCLVKGEKEKKERVLEKMRTVKNLQLPRQSINCNVLREKCPHLRGIDISDYESARPT ILIGLDHSHLLIPLGRKMGRSDEPMAIKTKLGWTVFGMNVKGHEAPHNQPMIHYDADSTMISKEIDRGKE IIQKPFVETVPNRAWSEDQRIAEPDEEDRGISIPVLHHHEAVVPDSSMAPLPLCGTHPHNPSPLHTGVDH LEPPDITTQRFVEREVRQPCPGESAAVLMEMRINPQPYVHPPLTNEEDEILSRRGIGSLTTKTLRHRGRP HRRRALLRPAIGLASNAGSQ
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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