Repbase Reports

2003, Volume 3, Issue 3
March 31, 2003
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 39

BEL16-I_AG

BEL16-I_AG is an internal portion of the BEL16_AG LTR retrotransposon - a consensus sequence.

Submitted:
31-Mar-2003
Accepted:
31-Mar-2003
Key Words:
LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING Zn-finger; reverse transcriptase; integrase; BEL16_AG; BEL16-LTR_AG; BEL16-I_AG
Source:
consensus
Organism:
Anopheles gambiae str. PEST
Taxonomy:
Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles
[1] Authors:
Kapitonov,V.V., Pavlicek,A., Drazkiewicz,A. and Jurka,J.
Title:
BEL16_AG, a family of Bel/Pao-like LTR retrotransposons from African malaria mosquito.
Journal:
Repbase Reports 3:(3) p. 39 (2003)
Abstract:
BEL16_AG is a young family of Bel/Pao-like LTR retrotransposons. BEL16-I_AG, an internal portion of BEL1_AG is flanked by BEL16-LTR_AG LTRs. The BEL16-I_AG consensus sequence was reconstructed based on multiple alignment of 18 copies; they are ~1% divergent from the consensus sequence. The consensus sequence encodes a 1736-aa BEL16_AGp Bel-like protein (pos. 231-5438). BEL16_AGp is composed of the peptidase A16 (pos. 145-304), RING Zn-finger (pos. 335-400), reverse transcriptase and integrase domains. BEL16_AGp: MSVSEDFAGFSDASGSNNTMQYTQAEDLDMIILKRERDRVVQSLTRIDTFLAQYKESDFPELTPRLDLLN ERWREFQALARNIGAKDYSEDNDVLYGEIEDKVMLLKGKLLGKLRAGAEIPSVKQERVCDDYNSVRLPQL TLPQFSGKYDEWLPYHDMFVVTVHENEKLSQVEKMLYLKGSLKGEALKVVDTLQACNSNYDVAWDALKKR YSNEYILKKRHVNAMLQWPRMKVMNTVGIHGLIDCFERNLQILKQLGEVTEQWGCLIIQIIISKLDESTQ QKWERHVEESEQKTVTDLLNFLRTQTRIMDAFAVDRPMAAGKSTSERRVASNVAAEAKCAKCDGSHMVEN CDSFRSLTLPRRREVVEAKKLCLNCLRQGHFQAKCWSRARCNICNRKHHSLLHGENVSETIGPSVREELP STSGTQNVVVNASSNRECTSVLLSTAIVSVRACGNKWLSARALIDSGSQVNLMTKGLAARLKLPQYESKT ALSGVGHSKVDITTSVTTVIRSKSCNYQERMQFLVLPRISSYRPVTGNQISRQNLPMNFVLADPNFDSDA EVDLLLGSEFYATFLKPDNRGKIRLELPALPTFISTVFGWVATGKVPLASEGSNYVTCGTCTRLDDLIER FWIIEEIREPLQHSQEERDCEAHFVQTHQRDSEGRYIVKLPFKCDLQNQLGPSSAIARKRFLQLERRFNR DPWLKQKYTAVINDYIDKGILVKVAANPDSEEAHGHYFLPHHPVIKASSTSTKVRPVFDGSASTDGGKSL NDLLMTGPVIQENLLALLLKFRMRSVALVADIKQMYLQVKVHPDDTRFQRVLWRGSSVESIEVYELQRVT FGLAPSSFLAIRVLQQLAIDEGENFPLARQALLEDFYVDDYIGGASSEEEAVRLQAELTLLLRKGGFHLT KWNSNKPDVLSSVSAEDRATSNVKMFEVPEEPIKTLGIAWLPESDQLYIDSNIQMNNESWSRRKVYSLVA RIYDPLGLVAPVTSWAKINMQSLWLATDDWDEEIPAVMQERWYAFQSQLGLLKEVKFSRHAVVHNPVAVQ LHCFSDASEAAYGACVYVRTIGSSGEVVVELLAAKSRPAPLKRVSLARLELCGALLAARLQKVVRQALRI PDVETFMWTDATIVLHWIRAPSHSWATYVANRVSEIQELTHGYKWMHVKGVDNPADIVSRGAMPNELLAS KLWFHGPGWLQLSEEEWKKNASGVLAIPEEELLERRKSSLVAAVSSESDDWCDRFSNYDKLLRITAYCMR FIRCCQRKLDPKHKGVLLVSELAEAKIRLVKREQRIYFAAEIKELSAGQTVRPKSSLKTLGAFLDGDGLL RVGGRLHRAKAMQVCSRFPLALPKKSRFTRLMAEYYHRLALHGGPTATLSALRREFWPIQGRSLVNSVCR GCLVCFRMNPALVQQPPGQLPVSRAMPARPFSIVGVDFCGPIYLKPVHRRAAAEKAYISIFVCFSVKAVH IELVESLSTHAFLAAFRRFVARRGLPSEVYSDNGLNFQGASKVIDDFYTLMNSDSAVEDISRYAVGAGVK WHFIPPHAPNFGGLWEAAVKAAKRVLLKVVGDRQLAFGEMSTVLAQVEAQLNSRPLTPLSEDPEELDVLT PGHFLIGAPMNALPEPDVGDVPINRLKRYEELRRVVQNHWARWRREYFSELHNEHQRGKAVVELKVGQMV LLKEDGKTPHHWPMGRIAEVFPGPDGVVRVVSIRTRNGLYKRPANRISLLPFERVN
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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