Repbase Reports |
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| 2003, Volume 3, Issue 3 |
| March 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 31 |
BEL12-I_AG |
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BEL12-I_AG is an internal portion of the BEL12_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 31-Mar-2003 |
Accepted: 31-Mar-2003 |
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Key Words: LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING Zn-finger; reverse transcriptase; integrase; BEL12_AG; BEL12-LTR_AG; BEL12-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V., Pavlicek,A., Drazkiewicz,A. and Jurka,J. |
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Title: BEL12_AG, a family of Bel/Pao-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(3) p. 31 (2003) |
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Abstract: BEL12_AG is a young family of Bel/Pao-like LTR retrotransposons. BEL12-I_AG, an internal portion of BEL1_AG is flanked by BEL12-LTR_AG LTRs. The BEL12-I_AG consensus sequence was reconstructed based on multiple alignment of 20 copies; they are less than 1% divergent from the consensus sequence. The consensus sequence encodes a 1726-aa BEL12_AGp Bel-like protein (pos. 582-5759). BEL12_AGp is composed of the peptidase A16 (pos. 130-250), RING Zn-finger (pos. 358-410), reverse transcriptase (pos. 700-900) and integrase (pos. 1450-1600) domains. BEL12_AGp: MPAADKRVKMFNLKRVEIMNTLQDFEEFTKSFDATIDAYQIPSRLEQLEELVSEFTELRKAFNETVDDSE AFDIMQKDRREFNKRSHEVRAFLLKNSSHSGASSGLNTTQVNTTISAGTQNHLRLPKVDLPSFDGEITKW LTFKDRFSSMVHDSTEMPEVLKLQYLLSALKGDAAHQFEHMQITADNYYVTWEALLKRYDNSKVLKREYF KAFYSLEKMKTDSTEELARIVNEANRLVRGLERLNEPVDKWDTPLTSLLFYKLDSKTLVAWEQYSVDFKT DEFTNLVEFLEQRVNILKSSAQNICNQYSANSIMVTGRQARRDGRNVALPVQQTNNTFKGYLKCPLCNEQ HPLHVCERFERASVINREEIVRKHGLCFNCLRKGHSARECRSTYVCQQCKRKHHSKLCKIGRLSEVEVVP STSRLTATAQANCSKKTVILSTAQIIILDVNDQPYKVRALLDNGSQLNFITERVAQELRLKRARVSEQIA GVGGAIMRVAGSVVGTIRSLTTEYTTCLEFLILPKIATDLPSETMDVRGWKLPKDVRLADPTFHERGSID MLIGADTFVEMIKAKKIKLDHELPTLLETELGWIVSGAYKHNNLNQSMACTIVSQGGENDIASLMNTFFN IEEVQDQNLWNVEERECEDHFQATTRRDENGRYVVRLPLKAERELGESKEVALRRLIGLERRFEREPKVK EAYEAFMQEYITLGHMSVRENENSSDGYYMPHHAVFKQDSTTTKCRVVFDGSCKTSNGRSLNDILKVGPT IQQDTTDILLRWRRRAIAVVGDVEKMYRQVWVHEEDRKFQRILWRSHSSEKIKTYELNTITYGTASAPFL AIRTLNQVLEDNKEKYPLAASRINDFYVDDFISGADSENEAKQLCEETKAALAMGGFPLRKWASNCPHIL PSETEIDNIQRVIELKSREGAVSTLGLVWNPILDTLGVKISEPETCEIYTKRSIIRTIAKIYDPLGIVDT VKAKAKQFMQRVWSLKKENGDSYGWDEEIPQQMRQEWEVFERQLTHLQEVQVPRCVTIVGARNIQIHGFC DASEEGYGACVYVRSTNGEEIVSRLFVSKSKVTPLATKHTIARLELCAAHLLGKLLVKLKRATEDPYETF CWTDSSTVIYWLKSSPSRWKTFVANRVSQIQNATKEFEWRHVPGIHNPADAVSRGRNPAEVVEDKLWWHG PDWLVKDPEHWPKNIESGNTCETAKEEKQTKTTLTCMVKEESFINKLCERVGSFTKLKRIVAYCHRFFDR KRIHRKSYFELRELKRAEKTIIRLVQNEVYATEYECIKQGQQVVRKSPLRVIRPILDKDNVMRVGGRLSN ADIKDEQKHPVIIPGKHRIAELIADKYHKILRHAGAQLMINTMQLRFWIVGARNVAKRTVFNCVKCTRCR PKLIQQPMADLPEQRVRQARPFSISGVDYAGPIMVKGTHRRAVPTKGYISIFVCFVTKAVHIELVSNLTS SAFLAALRRFVARRGHVTELHSDNGTNFRGANNKLRELYKLLNSDTHQDEVVGWCAERDMKWKFTPPAAP HFGGLWEAAVKSMKFHLKRVLGTGHLTFEDLSTLLAEIEACLNSRPITAISEDPNDMEALTPGHFLVGNH LQTVADVDIADVPTNRLNHWRLIQKHMQHIWNRWHREYLSTLQKRAKWNKNAISIEPGRLVILQEDNVAV SKWPMARVVDLHPGKDGVTRVVTLKCANGKEIRRPIHRIAPLPIES
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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