Repbase Reports |
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| 2003, Volume 3, Issue 2 |
| February 28, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 26 |
P4_AG |
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P4_AG, a P-like DNA transposon - a consensus sequence. |
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Submitted: 28-Feb-2003 |
Accepted: 28-Feb-2003 |
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Key Words: DNA transposon; P superfamily; composite transposon; HATN2_AG; P4_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: P4_AG: a family of P-like DNA transposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(2) p. 26 (2003) |
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Abstract: The A. gambiae genome harbors many divergent families of P-like DNA transposons. One of those families is P4_AG. P4_AG elements are flanked by 8-bp target site duplications. Terminal inverted repeats are 27 bp long (4 mismatches). Subterminal inverted repeats are 28 bp long (4 mismatches), their positions are 64-91 and 7606-7580. The P4_AG consensus sequence was reconstructed from 6 copies that are only ~2% divergent from each other. Presumably, P4_AG copies have multiplied in the genome during last 2 million years. P4_AG elements carry a copy of the hAT-like HATN2_AG transposon, that was inserted into an ancestral form of P4_AG. The P4_AG encodes a 877-aa P-like DNA transposase called P4_AGp. Putative exons (based on FGENESH): 310-570, 2573-4146, 4211-5011. P4_AGp: MSTCAASFCQHSRYIVKKMGLDVIFHKFPTDPTLLRKWVEFCQREEAWVPSISSILCSAHFNKTDYQLIN SPSKANRKILKKLKPSAFPSVIKSQAREPSNNVVQQCSTNNVVQQIETDEGRIDTSVEHHDDDLPSDNIT HAKCQNCVQNETEIELLNQTLKKTQDKCNNLLEVNTFLSKQLEIVSKELTQSQKEIELLKTNHNKFKDVA ISPNEFTTRMKNVLKDTLTSNQIDLITEERKRVRWTKAELSKFFTLRYLGKRAYQYLRDDLNFPAASIST LQRYGRTLNLKQGILDDVINLLKNITVDLPECHRECVLSFDEMKVNRILEYDPASDEVLGPHNYLQVVMA RGLFKNWKQPVFIGFDQQMTKEILFELIKRLYAIKINVVAIVSDNCQSNIGCWKDLGAHDYCHPFFSHPI TKCNIYVFPDAPHLLKLIRNWLIDTGFEYNNKLIKADKLFELVAYRNAAELTPVHKLTQNHLVMTPQERQ NVRRAAEVLSRTTAIALQRYFPDDCDAQELASFIEKVDMWFSVANSYSPCAKLHYKKSFNANENQLAALS DMFELMSNITALGKKSMQVFQKSLLMHITSLKMLYEDMRKKHSIVYISTYKLNQDVLENFFSQLRQIGGV HDHPSPLHCMYRIRMMILGKSPTTLKNHTELKNDDVENSHEHHEEFLSATVFSVADIPQSVPDISVMEKT NQICQAIEECSQESDLISTVSSTCNVQSAQESDGLQYVMGYIANKYNTKYPELDLGVQTFKLTTDHCYSQ PPTFVQHLSAGGLFEPSPTFLLLGNRMEKIFLKMHPDGTFSKTKKIVAKIAKNIQNQISELPVEIIRTFA KQRMIVRMRFLNLKSSTENLMKSKRKHVNQHGKGAKK
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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