Repbase Reports |
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| 2003, Volume 3, Issue 11 |
| November 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 190 |
Helitron-1_AN |
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Autonomous Helitron rolling-circle DNA transposon - a consensus sequence. |
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Submitted: 30-Nov-2003 |
Accepted: 30-Nov-2003 |
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Key Words: Rolling-circle DNA transposon; Helitron superfamily; Helitron-N1_AN; Helitron-1_AN |
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Source: consensus |
Organism: Emericella nidulans (Aspergillus nidulans) |
Taxonomy: cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Helitron-1_AN, autonomous family of Helitrons in the Aspergillus nidulans genome. |
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Journal: Repbase Reports 3:(11) p. 190 (2003) |
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Abstract: Autonomous Helitron rolling-circle DNA transposon. Helitrons in the A. nidulans genome do not contain a 3' palindromic element present in Helitrons from other eukaryotes. The genome harbors several nonautonomous copies (97% identity). inserted in the TA target site, no duplications. The 1439-aa Rep/Helicase Helitron-1_AN is encoded by a single ORF (pos. 987-5306). Helitron-1_ANp: MRPLNIGRMDLECPDCHGLHWKAERDKGTSIAAPKFGKCCGGGNNFIPPVEVPTFLQRLFNGSDHDNGRH FRQNARLYNCAFSMTSFNAGEDPRLKGQHGPFQIQGQLVHFLGPLLPDADRPPAFAQLWIYDRLTDAARD RNRALATAVRCTRFSDLRPGIVGELTEWFELHNRFSQQFMSATEQLFANEARGTPAELLLGPGINLVAVE GTDKRRYNLPREGEQVAALLIDPTVNDLDHGTFREVILQLRHPVNGSGLKRIDPSHAGYLPMQYPLFFPY GDDGWHWGCRRLDGLRLSARMYHAYRVHIRRREFSPWHYGGRLWQQYLVDAWGTIEQAKLEWIRHNQTTI RAELYSGLTDALAAADGDVLVANNTGQRVILPSNVVGTPRYMQQLFQDAMAICQFYGPPSLFITFTANPA WDEVTRELRPGETWEDRPDIVSRVFNILRAEMVDELCKKKLFGVAPGRFFTIEYQKRGLPHMHLVLFLEE RERFLDAAHIDEMVSAELPDPREDLELYKLVKKHMIHAPCGPVYNSRAPCCDKHSDSNMIYCTKRFPKAE QYETQPIEEGYPLYRRRADPRGAYRIKAKNNDMVRIDNTWVVPYNPYLLKRFRSHINVEVCRGVDVIKYI TKYIYKGPDRASMRSKVADEVDLYLDARYVGASEAVWRLLRFPLHQEWPPVTALHVHEPARHLVYYNSNA GMRELEDCIDGGKSMLMGFFEYNAHAANPANAALALNRYLYAKMPQFFTWDKADRIWRPRTRNRFAIGRM YHCSPNAGERFYIRLLLTVCVGPVSFEDLRTHDGILYPTFKAACNARGLLKDDREWHHAFEESVGSAIGA QLRTLFVVALTSGTLNDPPCLWEEFKCRICSDLEHYEIRRMDNPPDIEDRHIDYGLFIIARMLAEHGERE TLDRYGLPLWTAAWGRLEPQTDVLVPFIPPVDLARRVDALIPSLNIDQRRHFDTVSAAMADRSGECFYLQ GAGGTGKTYLYTALYYHLRAQGKTVLCIASSGIASLLLPYGRTSHSTFGIPLALHEESTCAVTLRSTRAR VLAGVDLIIWDEAPMQHRHAFEAVDRLLQDILKVKQLFGGISVLTGGDWQQCLPVVPKAPRAGIISATLR RSYIWPRLRAILRLTQNMRLPSVGINRLFSQLLARMSVDNTMHGTLELPDYVMDSASMSVEELCERVFPA ADMTHCHTADFQASDPDFFAGRAILSMRNSALVEFNDRITDSMRSQESMRYSADEALTDNVAEGVEEITH EFLQSVDLPGLPPARLRLKVGMPIMLLRNLRATEGLCNGTRMQIVELCRYTIRARILTGDFRGSVHLIPR ITLYSKPGDLHYVLSRTQFPVRPCFAITTNKSQGQSLQQVGVDLRVPAFSHGQLYVAMSRVTDVRRLSVL LPPGVRTTNNVVYPEVLQDIASLDDVPDWDDGMVTDEAA
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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