Repbase Reports |
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| 2002, Volume 2, Issue 7 |
| July 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 23 |
L1-3_DR |
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L1-3_DR is a non-LTR retrotransposon from the L1 clade. |
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Submitted: 31-Jul-2002 |
Accepted: 31-Jul-2002 |
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Key Words: Non-LTR retrotransposon; endonuclease; reverse transcriptase; L1 clade; L1-3_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: L1-3_DR, a family of non-LTR L1-like retrotransposons from zebrafish. |
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Journal: Repbase Reports 2:(7) p. 23 (2002) |
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Abstract: L1-3_DR is a family of L1-like non-LTR retrotransposon. This family was active recently (no stop codons in protein sequences encoded by the genomic element). It can be an active element. It encodes two proteins: 449-aa L1-3_DR1p (positions 214-1560) and 1279-aa L1-3_DR2p (positions 1565-5401). These proteins are most close to corresponding proteins encoded by other L1-like elements. L1-3_DR1p is a putative RNA/DNA binding protein, and L1-3_DR2p is composed of the AP endonuclease (aa positions 1-200) and reverse transcriptase domains. L1-3_DR1p: MDSQSNSTDLFDEAHGENITGRSGERQKENSTGLRGERQLENNTGQEGERNMVNKERQENQQQEMQQQRS GKKYMKEATVILNVDKVKEVRVLEIINAVTEKCGLGKILAIRPRQDKDYELTLENEETCDKLMDGLIIKG ETCEVKMLQNRDYVVSFMHLPAYLDDQLILDKLEGWGVFPITKIKRRVYPGTEIEDGTRYLKVRFPREVI SLPYSTRLETAEGQQYFRVMHSHQVKTCRLCMSPDHMVKDCPDFKCHKCEERGHFARDCDAIKCPDCQNY LSKCECWMEEEEEEDEIQVSGQMHEGNSEKESNEEEQTTTQTIQTTTEEITLKEENAKKEKEKETETDSQ QIEHEEEVAWTPMDITSSFKNVLDVIEKEDLKEQSKGTDRETGKHEEEVEKDKLEKRQTRRSAKVLSKLE TARKKGLKKGQLKSHNRYDSLRGLGEEED L1-3_DR2p: MTVFISFFLLLMVLNCVSFNARGLMDLRKFKNVKEKCKREEIIILQETNWKNEVMDIYKKEWDGDFYYSN GDTKAGRGVAILIKKNALQMSKVIYKDKQGKCMILEIKYEGKDIILVNVHAPNEESEKKSFFNILRRFLK NYKQIIVCGDFNTVFSRQDITEGMVFKSDTGRKELKSLIEEKGMIDIWRERNGKKKEFSRRQIVGNFVNQ SRIDYVLCTRNIEIYIEKIRYDETVLSDHKFVFFNFNTEEIQRGPGVWTLNSEILKNEDYVKKVKEIIEK EKGNQIYNEDKRLWWENVKFLIKKSTLTFCRIIQKNKRHKEKTIKENLEIELDKNEKDIQKIKEMEGKLK EIEEKKYEGARLRSKAKYVVEGEKCTKFFFDLERQKAKAETIKIIQGAKGESIEGNEEILKEIKKYYEEL FKTQGVDEVQMSKLLKQIKTKIDEEDKKECDQEIGEEEIRKAIESLNKKKSPGIDGLNSEFYVCFKEILI PILTDVFKEILQKEELNERMGMGLMKLIHKKGEKTLLKNYRPITMLNTDLKILTKILANRLKEVMPKIIK TTQAYAIKGRDIADITMSIKDIIEYMKEKKEEGYIISLDFEKAFDRVEHQFLFKVLKKFGFGEVFRKWIK ILYKGILTKIKCNGFLTECFKITRSIRQGCPLSALLYSLVAEPLGLAINEEEKIKGIEIEENKVNKKMFQ YADDTTLIVKGKESVKEAMKIVQQFCKGSGSKVNEDKTVYMKFGKETDLAECTNFKEVEEIKILGVLMGK DARKARDKMWEGFLTDIERRLNYWKLRTLTLKGKVLILNVLMESKLWHVLYVLEMPMWIEKRLKKCFTDF LWGGKPPRIAFNTVVGEIDKGGLGLIDVEQRKNSLRVKRVKKYLEKENKAEWKKTMKYFLNKCGNFNMGD GILWMKTKAWMTENLPEFYREILGAWGNFLKQVEYSPHGRENILNQPLFLNNNILSQGKVLYYKKWIEVG ILKVRDILYEFKEGFLTEQYVIDTMEEAKEEYNRKEIEKNLDIIKQAIPKEWIRSIEKFEKEKETKEVYV KTGEKICNFNECTVKNIYCFFRENVFKEPTANKYWIEKYKNVKANEIWGNMKGRYVETKVECLEFLIRHK AIFSDVILNKIGMEQSGMCKVCQKEEEGFLHMFLYCQKLEGFLKDCKVLIKGLLGDWDENETEWNRVVML GWNKNNENKKIVNLCIMLMKNAMWERRIVAKKEKMVMDVWGIFKRKMERYVEKLYVYHKNENILSELHKI LTDKACQVFKEMNWKLPHF
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Derived: Positions 106454 100935 Accession No AL807749 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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