Repbase Reports
2002, Volume 2, Issue 6
June 30, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 23

Tc1-4_DR

Tc1-4_DR is an autonomous DNA transposon - a consensus.

Submitted:
30-Jun-2002 		Accepted:
30-Jun-2002
Key Words:
Autonomous DNA transposon; Tc1 superfamily; TA target site; TIR; Dr000076; Dr000078; Tc1-4_DR
Source:
consensus 		Organism:
Danio rerio 		Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[3] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
Tc1-4_DR, an ancient Tc1-like autonomous DNA transposon from zebrafish.
Journal:
Repbase Reports 2:(6) p. 23 (2002)
Abstract:
Tc1-4_DR copies are flanked by the TA target site duplications generated upon their integration in the genome. Tc1-4 has perfect 51-bp terminal inverted repeats that belong to ~200-bp imperfect TIRs. There are approximately 1500 copies of Tc1-4_DR harbored by the zebrafish genome, they are ~13% divergent from the consensus sequence. The reconstructed 340-aa transposase, Tc1-4_DRp, is encoded by this transposon (positions 350-1369). Tc1-4_DRp: MGRGSPVCQQICEKIIEMFKNNVPQRKIGRHLDISPSTVHNIIKRFKESGGISVHKGQGCKPKLNNRDLR SLRRHCIKNRHSSISDITTWAQDYFGKPLSSTTIHSYIHKCQLKLYCAKRKPYVNSVQKRCRLLWARRHL GWTITQWKCVLWSDESVFQVFFGRNGRRVLRTKEEKDHPDCYQQQVQKPGSVMVWGCVSALGKGNLHFCD GTINAEKYIEILEHNMLPSRRYIFQGRPCIFQQDNAKPHSAHITKSWLRRKRIQVLDWPVCSPNLSPIEK VWCILCGKMLQRRPCTVAHLKTCLQEEWDKITPETLHHLVSSVPKRLLSVVKRNGNITKW
Derived:
[3] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Bao,Z.
    Dr000076, an unclassified and uncharacterized repeat.
    http://www.genetics.wustl.edu/fish_lab/repeats/

  2. Bao,Z.
    Dr000078, an unclassified and uncharacterized repeat.
    http://www.genetics.wustl.edu/fish_lab/repeats/

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