Repbase Reports

2002, Volume 2, Issue 6
June 30, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 6

HARBINGERN5_DR

HARBINGERN5_DR is a nonautonomous DNA transposon - a consensus.

Submitted:
30-Jun-2002
Accepted:
30-Jun-2002
Key Words:
Nonautonomous DNA transposon; HARBINGER superfamily; 3-bp TSD; 16-bp TIRs; Dr000025; Dr000168; Dr000182; HARBINGERN5_DR
Source:
consensus
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[2] Authors:
Kapitonov,V.V and Jurka,J.
Title:
HARBINGERN5_DR, an ancient family of Harbinger-like nonautonomous DNA transposon from zebrafish.
Journal:
Repbase Reports 2:(6) p. 6 (2002)
Abstract:
HARBINGERN5_DR copies are flanked by 3-bp target site duplications generated upon their integration in the genome. It has perfect 18-bp terminal inverted repeats similar to other HARBINGERs. There are several thousand copies of HARBINGERN5_DR harbored by the zebrafish genome; they are ~12% divergent from the consensus sequence.
Derived:
[2] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:
  1. Bao,Z.
    Dr000025, Dr000168 and Dr000182, unclassified and uncharacterized repeats.
    http://www.genetics.wustl.edu/fish_lab/repeats/

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