Repbase Reports

2002, Volume 2, Issue 5
May 31, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 20

HARBINGERN3_DR

HARBINGERN3_DR is a nonautonomous DNA transposon - a consensus.

Submitted:
31-May-2002
Accepted:
31-May-2002
Key Words:
Nonautonomous DNA transposon; Harbinger/PIF superfamily; 3-bp TSD; 16-bp TIRs; HARBINGERN3_DR
Source:
consensus
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
HARBINGERN3_DR, a nonautonomous DNA transposon from Danio rerio.
Journal:
Repbase Reports 2:(5) p. 20 (2002)
Abstract:
HARBINGERN3_DR is an ancient nonautonomous DNA transposon. Putatively, it belongs to the Harbinger/PIF superfamily. HARBINGERN3_DR copies are flanked by 3-bp target site duplications. The consensus sequence has perfect 21-bp terminal inverted repeats. There are approximately 1000 copies of HARBINGERN3_DR in the zebrafish genome; they are ~91% identical with the consensus sequence. This family is composed of minor subfamilies.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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