Repbase Reports |
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| 2002, Volume 2, Issue 5 |
| May 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 18 |
GYPSY5I_DR |
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GYPSY5I_DR is an internal portion of the GYPSY5_DR LTR retrotransposon. |
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Submitted: 31-May-2002 |
Accepted: 31-May-2002 |
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Key Words: LTR retrotransposon; endogenous retrovirus; gag; pol; reverse transcriptase; Gypsy; GYPSY5LTR_DR; GYPSY5I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: The GYPSY5_DR LTR retrotransposon from zebrafish. |
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Journal: Repbase Reports 2:(5) p. 18 (2002) |
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Abstract: GYPSY5I_DR is an internal portion of the GYPSY5_DR LTR retrotransposon. GYPSY5_DR was active recently, it is flanked by identical GYPSY5LTR_DRs. Remnants of the ~300-aa gag and ~1080-aa pol proteins are encoded by one ORF (1358-aa, positions 137-4141). GYPSY5_DR1p: MQQLRHPNPAVTPPATMTASQPTHVSNAPATVSPRLAFPEKFDGSPSRCKGFLLQCKLFVNQQPALYPTD SSRVAFVCNLLTGKALEWATAIWKEEECNYPTFETFLKQFREVFEHPADGRSPGEQLLSLTQGRNTAAEY ALSFRTLAAQTNWVEDTLKTLFRRGLSTNLQSELACRDEGKKLNELIELTIRLDHLIRSRRNPRTQLHVS SDTPPDEPMQLGFTRLTHEERMHRLQNHLCLYCGQSGHRKSTCSVRPQTPVQSVSPSHVPALFSVLIPVI IKFDKRMINTTALVDSGSAGNFISKKFALCHELSLSSYDSCLAVEALDGRPVGEGRIRMITNKLQLQVGV LHIEEMQFYIIDSVNHPLVLGLPWLRRHDPHISWRDGQILQWSESCMKQCIQPIHKIPLRTTNVLPELVD ELIPIEYHSSSSPPTGRIFPLSQPEHKAMSEYIDEELAKGFIRPSTSPASAGFFFVKKKDGSLRPCIDYR GLNKITVKFRYPLPLVPPALEQLRKARYYTKLDLRSAYNLVRIRAGDEWKTAFSTTRGHYEYTVMPFGLS NCPSVFQSFMNDVFRDMLDRWFIIYIDDILIYSNTMKEHVEHVRMVLQRMIQHRLYAKLEKCEFHQTQIA FLGYVISAEGITMDDTKVQAVQRWPLPQNLKELQRFLGFANFYRRFIRGFSSIAAPLTAMTKRNSHKLSW SSEARQAFSDLKTQFTTAPILRHPNPDLPFIVEVDASNTGVGAVLSQRQGQPSKMYPCAFFSRKLTSAER NYDVGNRELLAMKLALEEWRHWLEGASQQFTILTDHKNLEYLRSAKRLNPRQARWALFFTRFDFIVTYRP GSKNSKADALSRLSEDKTPISDETIIPTNLLVAPVQWDILTEIQEANRENNPPVDCPNHLIFVPNNIRTR LLTHIHDTPSSGHPGITATLELVKARFWWPSLTKDVINYVQKCKICQSTKASHQTPAGLLQPLPVPQRPW SHIAVDFITDLPVSQNNTVILTVVDRFSKACRLIPLPKLPSAFETAEALCNHVFRMFGLPDDIVSDRGSQ FTSRVWSALCKNLNINVSLTSGYHPQSNGQTERMNQEVIRFLRSYCHQQQHDWSRYLMWAEYAQNSLIKP ATGITPFKCILGYQPPLFPWSGEPTELPAVTDWLQRSEDVWNQAHRHLMRAVRRREIQANRHRRQGPTYQ PGQWVWLSTRDLRLRLPCRKLSPRYVGPFKIVRQITPVSFRLALPNHYRISPTFHMSLLKPAGGPREEAA EEESETRTPPPVMIEGEEAYLVREVLDSRRRGGALQYLVDWEGYGPEERSWVNARDILDPTLTEEFHQRF PEKPAPRQRGRPRRQVPSRFRSRSQEGG
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Derived: Positions 28401 24109 Accession No AL672044 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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