Repbase Reports |
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| 2002, Volume 2, Issue 5 |
| May 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 4 |
CATCH3I_DR |
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Internal sequence of the CATCH3_DR endogenous retrovirus. |
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Submitted: 31-May-2002 |
Accepted: 31-May-2002 |
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Key Words: Endogenous retrovirus; LTR retrotransposon; BELL/CATCH superfamily; CATCH3_DRp polyprotein; gag; protease; reverse transcriptase; endonuclease; CATCH3_DR; CATCH3LTR_DR; CATCH3I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: CATCH3, an endogenous zebrafish retrovirus from the BEL/CATCH superfamily. |
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Journal: Repbase Reports 2:(5) p. 4 (2002) |
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Abstract: CATCH3I_DR is an internal portion of the CATCH3_DR endogenous retrovirus, which belongs to the BEL/CATCH superfamily. It is flanked by 99% identical long terminal repeats, deposited in Repbase as CATCH3LTR_DR. The 3' end of CATCH3LTR_DR and 5' end of CATCH3I_DR are not precisely defined. CATCH3I_DR encodes CATCH3_DRp, a 2007-aa polyprotein (positions 209-6229). CATCH3_DRp: MSLMNCDDDGATTCEQTETIVPFEKFETEHVREKRLIKLTPKALLEKLETLQKTRKCKLSKAKNLMAIIK DFMSNREYEKEVQCSFEKFIKLRDETKEMHNSVMVLLPSEEKEKQQTWFNGKMLICDEFVDDVEKWLSAE SQVSCSGVDARVCQEDVNPDDSISNISSCKSSKSSSKKSSSSVRSGRSSAASARIMAEAEKAALMARAAA LKEKHTLEVQQEKLRHRQEQLDIDAEIAAATAKIAVLNNQSLKTCTDDMNAYCDKGTVTLNPHAEAYVPI EVPLQESSRNVIQQIHSVPQIDPHFTSQMQSSSVMQNSDGIITSNLCSILQKQNEITTLLVQQQQSSTLP QRDIPVFDGNPLQYKTFMRAFEHGIEDKTKNSRDCLYFLEQYTQGQPREIVRSCQHMDAQRGYVQAKALL KEHYGNEFKIASAYVEKVLAWPSIKSEDVNSLQSYALFLRGCCNVMEEIDYMEELEMPSNLKTIIMKLPY KLRENWRTVACELMERRKQRARFKDIVIFVEHQVKMSSDPLFGDIQSTQPVQQKFQPKTKVRNSFATTVV TNNKSIQCCETDLRSKAPVVCLCCKRDHLLEQCTQMQNKLHKDKLNFLKEKGVCFGCFSFGHISKRCDKR LTCTVCGQKHPSILHIQQKERVCTQEQSHSSLSSAHVALTTCGQTGAGDDGDCALSIVPVQVKSSKGQTV IQTYAFLDPGSSTTFCSERLMHSLKLKGKETNIVLKTMGNQRAVNSTVLTGLEVSNLLDDTFYSLPEVFT QERMSVSRDNIVTQKDLENWPYLKGVEIPQIPADVDLLIGANASRVMEPWEVINSNGDGPYAVRTLLGWV VNGPLQGSRNKVKCSGVTVNRISVRKLEDMLGKQYNHDFNENSVEKKEMSREEHAFMEKVSKSIEFQDGH YKLNLPFRMEIPMLPNNLCVAKQRLIGLKRKFERNKIFHQEYKDFMDEVIKHGYAEIVPLHQLKQDEGKV WYIPHHGVYHPKKQTLRVVFDCGAAFKGTSLNDQLLQGPNLTNSLLGVLVRFRQEPIAFMADVKAMFHQV KVAEEDTDFLRFLWWPDGDINQDSVEYRMKVHLFGAVSSPSCACYALRRTAEDNKDDFPEKVIDTIHTNF YMDDCSKSVPSEEEAVLMIKDLTDVCLAGGFQLIKWISNSRIVLQSVPEEHRAQGIKMMDLDKDQLPMER ALGLWWCVESDTFNFKITSKDHPCTRRGVLSKVCSVYDPLGFLAPFTLTAKILLQELCRIRCGWDDLLPS NLQRQWSLWLKELEKMADFKMDRCLKPAGMDELTNVQLHHFADASTLGYGTVTYLRMETKQDVHVTFLLS KARVAPLKSVTIPRLELTAAVLAARVDKMLRAEMQFPLVDSVFWTDSTSVLKYIKNEDKRFLTFVANRIS AIREITTPLQWRYIPTTQNPADCCSRGLKADQLLTNREWINGPSYLWKPVEEWPAQIFDSALKADDPEVK RNICVNSTLVSEQSNATHRLITHFSDWTKLKVAVAWLLKLKTVLKQRSQKRKEIQASLDSSGVTSKKTEK ELRKLTGSVVTPNLSLQDVNEAEVAIVAFSQRQQFKKEIDALSVSPVSKISRDSKLYKLDPVYQDGILRV GGRLRNSAMPEERKHPIILAKDQHIATLILRHIHQQLGHSGRNYMLSELRKRYWIIKGNAAARRIISSCG HCRRFGVKVGEQKMADLPKERLLPDLPPFSNVGVDYFGPVEVKRGRSIVKRYGVIFTCMASRAVHLEVAY SLDTDSCINTLRRFICRRGQVTQIRSDNGTNFVAAEKELKESLRSWNQNKIQRAMLQKGVQWSFNPPGGS HYGGIWERVIRMVKIILNSILHQQILDDEGFHTVLCEIEAILNDRPITKLSDDPNDLESLTPNHLLQMKG KPVLPPGLFEKSELYSKRRWKQVQYMCDLFWKRWTNEYLPLLQDRQKWNKERRNFVPGDIVVIVDSSAPR GSWLMGRILEVFPDKNGLVRSVRVQTKTSVLERPVTKLCLLYDNMEI CATCH3_DRp is composed of gag-like, protease, reverse transcriptase, endonuclease domains similar to other retroviruses from the BEL/CATCH superfamily.
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Derived: Positions 46181 52553 Accession No AL590152 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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