Repbase Reports

2002, Volume 2, Issue 4
April 30, 2002
Copyright © 2001-2016 - Genetic Information Research Institute
ISSN# 1534-830X
Page 23

PROTOP1_DR

PROTOP1_DR is a nonautonomous P-like DNA transposon - a consensus.

Submitted:
30-Apr-2002
Accepted:
30-Apr-2002
Key Words:
Nonautonomous DNA transposon; P superfamily; PROTOP1_DR
Source:
consensus
Organism:
Danio rerio
Taxonomy:
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio
[1] Authors:
Kapitonov,V.V. and Jurka,J.
Title:
PROTOP1_DR, a nonautonomous P-like DNA transposon from zebrafish.
Journal:
Repbase Reports 2:(4) p. 23 (2002)
Abstract:
The consensus sequence was reconstructed based on 10 copies present in sequenced DNA that represents ~1% of the genome. Approximately 1000 copies of PROTOP1_DR are expected to populate the complete zebrafish genome. PROTOP1_DR copies are 7% divergent from the consensus sequence. This element is characterized by 33-bp terminal inverted repeats and 7-bp targets site duplications. We classify this element as a nonautonomous DNA transposon from the P superfamily. PROTOP, PROTOP_A and PROTOP_B DNA transposons found previously in D. melanogaster are characterized also by 7-bp TSD and 30-bp TIRs similar to those in PROTOP1_DR.
Derived:
[1] (Consensus)
Download Sequence - Format:
IG, EMBL, FASTA
References:

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